EY756593

Overview
NameEY756593
Unique NameEY756593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length508
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY756593 vs. ExPASy Swiss-Prot
Match: H2B1N_HUMAN (Histone H2B type 1-N OS=Homo sapiens GN=HIST1H2BN PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 2.190e-31
Identity = 67/78 (85.90%), Postives = 74/78 (94.87%), Query Frame = 2 
Query:   11 EVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 244
            +VLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   44 KVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121
[Close]
BLAST of EY756593 vs. ExPASy Swiss-Prot
Match: H2B1M_MOUSE (Histone H2B type 1-M OS=Mus musculus GN=Hist1h2bm PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 2.190e-31
Identity = 67/78 (85.90%), Postives = 74/78 (94.87%), Query Frame = 2 
Query:   11 EVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 244
            +VLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   44 KVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121
[Close]
BLAST of EY756593 vs. ExPASy Swiss-Prot
Match: H2B1M_HUMAN (Histone H2B type 1-M OS=Homo sapiens GN=HIST1H2BM PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 2.190e-31
Identity = 67/78 (85.90%), Postives = 74/78 (94.87%), Query Frame = 2 
Query:   11 EVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 244
            +VLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   44 KVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121
[Close]
BLAST of EY756593 vs. ExPASy Swiss-Prot
Match: H2B1K_HUMAN (Histone H2B type 1-K OS=Homo sapiens GN=HIST1H2BK PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 2.190e-31
Identity = 67/78 (85.90%), Postives = 74/78 (94.87%), Query Frame = 2 
Query:   11 EVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 244
            +VLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   44 KVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121
[Close]
BLAST of EY756593 vs. ExPASy Swiss-Prot
Match: H2B1K_BOVIN (Histone H2B type 1-K OS=Bos taurus GN=HIST1H2BK PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 2.190e-31
Identity = 67/78 (85.90%), Postives = 74/78 (94.87%), Query Frame = 2 
Query:   11 EVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 244
            +VLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   44 KVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121
[Close]
BLAST of EY756593 vs. ExPASy Swiss-Prot
Match: H2B1J_HUMAN (Histone H2B type 1-J OS=Homo sapiens GN=HIST1H2BJ PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 2.190e-31
Identity = 67/78 (85.90%), Postives = 74/78 (94.87%), Query Frame = 2 
Query:   11 EVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 244
            +VLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   44 KVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121
[Close]
BLAST of EY756593 vs. ExPASy Swiss-Prot
Match: H2B1H_MOUSE (Histone H2B type 1-H OS=Mus musculus GN=Hist1h2bh PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 2.190e-31
Identity = 67/78 (85.90%), Postives = 74/78 (94.87%), Query Frame = 2 
Query:   11 EVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 244
            +VLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   44 KVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121
[Close]
BLAST of EY756593 vs. ExPASy Swiss-Prot
Match: H2B1H_HUMAN (Histone H2B type 1-H OS=Homo sapiens GN=HIST1H2BH PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 2.190e-31
Identity = 67/78 (85.90%), Postives = 74/78 (94.87%), Query Frame = 2 
Query:   11 EVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 244
            +VLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   44 KVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121
[Close]
BLAST of EY756593 vs. ExPASy Swiss-Prot
Match: H2B1D_HUMAN (Histone H2B type 1-D OS=Homo sapiens GN=HIST1H2BD PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 2.190e-31
Identity = 67/78 (85.90%), Postives = 74/78 (94.87%), Query Frame = 2 
Query:   11 EVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 244
            +VLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   44 KVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121
[Close]
BLAST of EY756593 vs. ExPASy Swiss-Prot
Match: H2B1C_MOUSE (Histone H2B type 1-C/E/G OS=Mus musculus GN=Hist1h2bc PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 2.190e-31
Identity = 67/78 (85.90%), Postives = 74/78 (94.87%), Query Frame = 2 
Query:   11 EVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 244
            +VLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   44 KVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121
The following BLAST results are available for this feature:
BLAST of EY756593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2B1N_HUMAN2.190e-3185.90Histone H2B type 1-N OS=Homo sapiens GN=HIST1H2BN ... [more]
H2B1M_MOUSE2.190e-3185.90Histone H2B type 1-M OS=Mus musculus GN=Hist1h2bm ... [more]
H2B1M_HUMAN2.190e-3185.90Histone H2B type 1-M OS=Homo sapiens GN=HIST1H2BM ... [more]
H2B1K_HUMAN2.190e-3185.90Histone H2B type 1-K OS=Homo sapiens GN=HIST1H2BK ... [more]
H2B1K_BOVIN2.190e-3185.90Histone H2B type 1-K OS=Bos taurus GN=HIST1H2BK PE... [more]
H2B1J_HUMAN2.190e-3185.90Histone H2B type 1-J OS=Homo sapiens GN=HIST1H2BJ ... [more]
H2B1H_MOUSE2.190e-3185.90Histone H2B type 1-H OS=Mus musculus GN=Hist1h2bh ... [more]
H2B1H_HUMAN2.190e-3185.90Histone H2B type 1-H OS=Homo sapiens GN=HIST1H2BH ... [more]
H2B1D_HUMAN2.190e-3185.90Histone H2B type 1-D OS=Homo sapiens GN=HIST1H2BD ... [more]
H2B1C_MOUSE2.190e-3185.90Histone H2B type 1-C/E/G OS=Mus musculus GN=Hist1h... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-010-D04-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756593 ID=EY756593; Name=EY756593; organism=Citrus sinensis; type=EST; length=508bp
CCACGCGTCCGAGGTGCTGAAGCAGGTGCATCCTGATATAGGAATCTCCA
GCAAGGCCATGGGTATCATGAACAGCTTTATCAACGATATCTTCGAGAAA
TTGGCTCAGGAGTCGTCTCGTCTCGCGAGATACAACAAGAAGCCCACTAT
CACTTCTCGTGAGATCCAGACTGCTGTTAGACTTGTCTTGCCCGGTGAGC
TTGCCAAGCATGCCGTTTCTGAAGGCACCAAGGCTGTCACTAAGTTTACT
AGCTCTTAATGAACCTATAGCTTCAATAATTCAATTAGTATCTTCTCTTT
CTAGCTTGGGCTCTGCAATTTTTAAGGTCCTGTTTCTTTTATTTTCCTTT
TGGTTGTAGATTTTCTCTTTTGTTTACTTTTTGTATCTACCCTACCCAAC
AACCTAATCGAAGTTCTTTTTGCTCNNNNNNAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAANGG
back to top