EY756593

Overview
NameEY756593
Unique NameEY756593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length508
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY756593 vs. ExPASy Swiss-Prot
Match: H2B1C_HUMAN (Histone H2B type 1-C/E/F/G/I OS=Homo sapiens GN=HIST1H2BC PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 2.190e-31
Identity = 67/78 (85.90%), Postives = 74/78 (94.87%), Query Frame = 2 
Query:   11 EVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 244
            +VLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   44 KVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121
[Close]
BLAST of EY756593 vs. ExPASy Swiss-Prot
Match: H2B1B_HUMAN (Histone H2B type 1-B OS=Homo sapiens GN=HIST1H2BB PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 2.190e-31
Identity = 67/78 (85.90%), Postives = 74/78 (94.87%), Query Frame = 2 
Query:   11 EVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 244
            +VLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   44 KVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121
[Close]
BLAST of EY756593 vs. ExPASy Swiss-Prot
Match: H2B2E_MOUSE (Histone H2B type 2-E OS=Mus musculus GN=Hist2h2be PE=1 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 2.860e-31
Identity = 66/78 (84.62%), Postives = 74/78 (94.87%), Query Frame = 2 
Query:   11 EVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 244
            +VLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQT+VRL+LPGELAKHAVSEGTKAVTK
Sbjct:   44 KVLKQVHPDTGISSKAMGIMNSFVNDIFERIANEASRLAHYNKRSTITSREIQTSVRLLLPGELAKHAVSEGTKAVTK 121
[Close]
BLAST of EY756593 vs. ExPASy Swiss-Prot
Match: H2B12_XENLA (Histone H2B 1.2 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 3.736e-31
Identity = 66/78 (84.62%), Postives = 74/78 (94.87%), Query Frame = 2 
Query:   11 EVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 244
            +V+KQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   44 KVMKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121
[Close]
BLAST of EY756593 vs. ExPASy Swiss-Prot
Match: H2B_ACRFO (Histone H2B OS=Acropora formosa PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 6.372e-31
Identity = 66/78 (84.62%), Postives = 74/78 (94.87%), Query Frame = 2 
Query:   11 EVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 244
            +VLKQVHPD GISSKAMGIMNSF+NDIFE++A ESSRL+ YNKK TI+SREIQTA+RL+LPGELAKHAVSEGTKAVTK
Sbjct:   43 KVLKQVHPDTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAIRLLLPGELAKHAVSEGTKAVTK 120
[Close]
BLAST of EY756593 vs. ExPASy Swiss-Prot
Match: H2B3_TIGCA (Histone H2B.3 OS=Tigriopus californicus PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 6.372e-31
Identity = 66/78 (84.62%), Postives = 73/78 (93.59%), Query Frame = 2 
Query:   11 EVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 244
            +VLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   41 KVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 118
[Close]
BLAST of EY756593 vs. ExPASy Swiss-Prot
Match: H2B1_TIGCA (Histone H2B.1/H2B.2 OS=Tigriopus californicus PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 6.372e-31
Identity = 66/78 (84.62%), Postives = 73/78 (93.59%), Query Frame = 2 
Query:   11 EVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 244
            +VLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   41 KVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 118
[Close]
BLAST of EY756593 vs. ExPASy Swiss-Prot
Match: H2B1K_MACFA (Histone H2B type 1-K OS=Macaca fascicularis GN=HIST1H2BK PE=2 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 6.372e-31
Identity = 66/78 (84.62%), Postives = 74/78 (94.87%), Query Frame = 2 
Query:   11 EVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 244
            +VLK+VHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   44 KVLKRVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121
[Close]
BLAST of EY756593 vs. ExPASy Swiss-Prot
Match: H2B_PLADU (Histone H2B OS=Platynereis dumerilii PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 8.322e-31
Identity = 66/78 (84.62%), Postives = 73/78 (93.59%), Query Frame = 2 
Query:   11 EVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 244
            +VLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   41 KVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 118
[Close]
BLAST of EY756593 vs. ExPASy Swiss-Prot
Match: H2B_LITVA (Histone H2B (Fragments) OS=Litopenaeus vannamei PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 8.322e-31
Identity = 66/78 (84.62%), Postives = 73/78 (93.59%), Query Frame = 2 
Query:   11 EVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 244
            +VLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   34 KVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 111
The following BLAST results are available for this feature:
BLAST of EY756593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2B1C_HUMAN2.190e-3185.90Histone H2B type 1-C/E/F/G/I OS=Homo sapiens GN=HI... [more]
H2B1B_HUMAN2.190e-3185.90Histone H2B type 1-B OS=Homo sapiens GN=HIST1H2BB ... [more]
H2B2E_MOUSE2.860e-3184.62Histone H2B type 2-E OS=Mus musculus GN=Hist2h2be ... [more]
H2B12_XENLA3.736e-3184.62Histone H2B 1.2 OS=Xenopus laevis PE=1 SV=2[more]
H2B_ACRFO6.372e-3184.62Histone H2B OS=Acropora formosa PE=3 SV=1[more]
H2B3_TIGCA6.372e-3184.62Histone H2B.3 OS=Tigriopus californicus PE=3 SV=2[more]
H2B1_TIGCA6.372e-3184.62Histone H2B.1/H2B.2 OS=Tigriopus californicus PE=3... [more]
H2B1K_MACFA6.372e-3184.62Histone H2B type 1-K OS=Macaca fascicularis GN=HIS... [more]
H2B_PLADU8.322e-3184.62Histone H2B OS=Platynereis dumerilii PE=3 SV=2[more]
H2B_LITVA8.322e-3184.62Histone H2B (Fragments) OS=Litopenaeus vannamei PE... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-010-D04-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756593 ID=EY756593; Name=EY756593; organism=Citrus sinensis; type=EST; length=508bp
CCACGCGTCCGAGGTGCTGAAGCAGGTGCATCCTGATATAGGAATCTCCA
GCAAGGCCATGGGTATCATGAACAGCTTTATCAACGATATCTTCGAGAAA
TTGGCTCAGGAGTCGTCTCGTCTCGCGAGATACAACAAGAAGCCCACTAT
CACTTCTCGTGAGATCCAGACTGCTGTTAGACTTGTCTTGCCCGGTGAGC
TTGCCAAGCATGCCGTTTCTGAAGGCACCAAGGCTGTCACTAAGTTTACT
AGCTCTTAATGAACCTATAGCTTCAATAATTCAATTAGTATCTTCTCTTT
CTAGCTTGGGCTCTGCAATTTTTAAGGTCCTGTTTCTTTTATTTTCCTTT
TGGTTGTAGATTTTCTCTTTTGTTTACTTTTTGTATCTACCCTACCCAAC
AACCTAATCGAAGTTCTTTTTGCTCNNNNNNAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAANGG
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