EY756590

Overview
NameEY756590
Unique NameEY756590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_ACIBT (Triosephosphate isomerase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=tpiA PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.706e-15
Identity = 51/117 (43.59%), Postives = 69/117 (58.97%), Query Frame = 1 
Query:   16 RPAGSTLDVVAAQTKAIADRVSS---CSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 354
            R  G    VV  Q   IA  V++    + +V+AYEP+WAIGTGK A+P  AQ +H ++R+ L   T     +   I+YGGSV   N  ELAA PD++G LVGGASL    F  I+++
Sbjct:  145 REQGQAEQVVLQQICDIAPVVTAEQWQNQVVIAYEPIWAIGTGKTASPQDAQAMHAKIREGLCQLT--PAGSNIAILYGGSVKAENAVELAACPDINGALVGGASLNAASFYQIVQA 259
[Close]
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_ACIBS (Triosephosphate isomerase OS=Acinetobacter baumannii (strain SDF) GN=tpiA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.706e-15
Identity = 51/117 (43.59%), Postives = 69/117 (58.97%), Query Frame = 1 
Query:   16 RPAGSTLDVVAAQTKAIADRVSS---CSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 354
            R  G    VV  Q   IA  V++    + +V+AYEP+WAIGTGK A+P  AQ +H ++R+ L   T     +   I+YGGSV   N  ELAA PD++G LVGGASL    F  I+++
Sbjct:  145 REQGQAEQVVLQQICDIAPVVTAEQWQNQVVIAYEPIWAIGTGKTASPQDAQAMHAKIREGLCQLT--PAGSNIAILYGGSVKAENAVELAACPDINGALVGGASLNAASFYQIVQA 259
[Close]
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_ACIBC (Triosephosphate isomerase OS=Acinetobacter baumannii (strain ACICU) GN=tpiA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.706e-15
Identity = 51/117 (43.59%), Postives = 69/117 (58.97%), Query Frame = 1 
Query:   16 RPAGSTLDVVAAQTKAIADRVSS---CSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 354
            R  G    VV  Q   IA  V++    + +V+AYEP+WAIGTGK A+P  AQ +H ++R+ L   T     +   I+YGGSV   N  ELAA PD++G LVGGASL    F  I+++
Sbjct:  145 REQGQAEQVVLQQICDIAPVVTAEQWQNQVVIAYEPIWAIGTGKTASPQDAQAMHAKIREGLCQLT--PAGSNIAILYGGSVKAENAVELAACPDINGALVGGASLNAASFYQIVQA 259
[Close]
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS1_RHIEC (Triosephosphate isomerase 1 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=tpiA PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.228e-15
Identity = 47/116 (40.52%), Postives = 64/116 (55.17%), Query Frame = 1 
Query:   16 RPAGSTLDVVAAQTKAIADRVSSCSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAE 360
            R AG  LDV+  Q  A     ++    V+AYEP+WAIGTG   T    ++ H  +R  L +    E     R++YGGSV  AN  EL    +VDG L+GGASLK  +F+ I ++ E
Sbjct:  138 RRAGQELDVIKRQLSASVPDAATAENTVIAYEPIWAIGTGVTPTSGDVEKAHAFMRAELVSRFGDE-GRKMRLLYGGSVKPANAGELLGIANVDGALIGGASLKAADFLAIYRAYE 252
[Close]
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHY (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.909e-15
Identity = 48/104 (46.15%), Postives = 62/104 (59.62%), Query Frame = 1 
Query:   22 AGSTLDVVAAQTKAIADRVSSCSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 333
            AG T  V+ +Q  AI   V +    ++AYEP+WAIGTGK AT A A++V   +++    NT         +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:  139 AGLTKKVIISQINAIKS-VLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGLIKENFGKNTM--------VIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233
[Close]
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHJ (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.909e-15
Identity = 48/104 (46.15%), Postives = 62/104 (59.62%), Query Frame = 1 
Query:   22 AGSTLDVVAAQTKAIADRVSSCSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 333
            AG T  V+ +Q  AI   V +    ++AYEP+WAIGTGK AT A A++V   +++    NT         +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:  139 AGLTKKVIISQINAIKS-VLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGLIKENFGKNTM--------VIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233
[Close]
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_MYCH7 (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain 7448) GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.909e-15
Identity = 47/104 (45.19%), Postives = 61/104 (58.65%), Query Frame = 1 
Query:   22 AGSTLDVVAAQTKAIADRVSSCSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 333
            AG T  V+ +Q  AI   V +    ++AYEP+WAIGTGK AT A A++V   +++             T +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:  139 AGLTKKVIISQINAIKS-VLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGMIKE--------NFGKDTTVIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233
[Close]
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_MYCH2 (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain 232) GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.909e-15
Identity = 48/104 (46.15%), Postives = 62/104 (59.62%), Query Frame = 1 
Query:   22 AGSTLDVVAAQTKAIADRVSSCSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 333
            AG T  V+ +Q  AI   V +    ++AYEP+WAIGTGK AT A A++V   +++    NT         +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:  139 AGLTKKVIISQINAIKS-VLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGLIKENFGKNTM--------VIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233
[Close]
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_ACIAD (Triosephosphate isomerase OS=Acinetobacter sp. (strain ADP1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.909e-15
Identity = 49/109 (44.95%), Postives = 64/109 (58.72%), Query Frame = 1 
Query:   16 RPAGSTLDVVAAQTKAIADRVSSCS---TIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 333
            R  G    +V  Q   IA  VS+      IV+AYEP+WAIGTG+ A+P  AQ +H ++R+ L   T     +   ++YGGSV   N  ELAA PD++G LVGGASL  E
Sbjct:  145 REQGLAEQIVLQQICDIAPVVSAEQWQHQIVIAYEPIWAIGTGRTASPEDAQAIHAKIREGLCQIT--PAGSQIALLYGGSVKPENAVELAACPDINGALVGGASLNAE 251
[Close]
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_MYCPN (Triosephosphate isomerase OS=Mycoplasma pneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.800e-15
Identity = 43/83 (51.81%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:   76 VSSCSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 324
            +S    +V+AYEP+WAIGTGK ATP  A     ++R +L    + EIA  T I+YGGSV   N KELA    +DGFLVG ASL
Sbjct:  149 LSLLKQLVIAYEPIWAIGTGKTATPEIANNTIAQIRVYLSELYNKEIAQQTSILYGGSVAKDNIKELAQTEQIDGFLVGKASL 231
The following BLAST results are available for this feature:
BLAST of EY756590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ACIBT1.706e-1543.59Triosephosphate isomerase OS=Acinetobacter baumann... [more]
TPIS_ACIBS1.706e-1543.59Triosephosphate isomerase OS=Acinetobacter baumann... [more]
TPIS_ACIBC1.706e-1543.59Triosephosphate isomerase OS=Acinetobacter baumann... [more]
TPIS1_RHIEC2.228e-1540.52Triosephosphate isomerase 1 OS=Rhizobium etli (str... [more]
TPIS_MYCHY2.909e-1546.15Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_MYCHJ2.909e-1546.15Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_MYCH72.909e-1545.19Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_MYCH22.909e-1546.15Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_ACIAD2.909e-1544.95Triosephosphate isomerase OS=Acinetobacter sp. (st... [more]
TPIS_MYCPN3.800e-1551.81Triosephosphate isomerase OS=Mycoplasma pneumoniae... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-010-C12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756590 ID=EY756590; Name=EY756590; organism=Citrus sinensis; type=EST; length=574bp
TTCCGTCGACCCACGCGTCCGGCAGGATCTACTCTGGATGTTGTTGCTGC
ACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGTTCAACCATTGTTT
TGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCACTCCA
GCGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTTGCAAA
CACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGGATCCG
TAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTGACGGA
TTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATCATCAA
ATCTGCTGAGCTGAAGTAAAATTCTTGAGCTTTATTTCAAGGGCAGTTTG
CTGATGAAGTATTTACTGTTTGTGGATATATAGAATACGTTTGGTATAAT
TTCAGAATTACTTTTGTTTTTGATAAGCGCGACCAACTGAAACCTTTTTT
TAAACTTTTTTAATTATCTTTGTTTCCTAAGTGTTGGAGTTGAATAAGTC
TTATGTAGTGTTTACCTGCNNNNN
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