EY756590

Overview
NameEY756590
Unique NameEY756590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_LYSSC (Triosephosphate isomerase OS=Lysinibacillus sphaericus (strain C3-41) GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.800e-15
Identity = 50/117 (42.74%), Postives = 67/117 (57.26%), Query Frame = 1
Query:   16 RPAGSTLDVVAAQTKAIAD--RVSSCSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 357
            R AG+T   VA Q KA            +V+AYEP+WAIGTGK AT   A +V   +R  +        A A RI YGGSV   N  EL ++  +DG LVGGASL+PE ++ ++++A
Sbjct:  134 REAGTTEQKVAGQIKAALAGFEAQQVEHMVIAYEPIWAIGTGKTATADDANQVCGAIRSVVEELFDAATANAVRIQYGGSVKPDNVHELLSKEHIDGALVGGASLQPESYLTLLEAA 250          
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_CLOPS (Triosephosphate isomerase OS=Clostridium perfringens (strain SM101 / Type A) GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.800e-15
Identity = 47/105 (44.76%), Postives = 60/105 (57.14%), Query Frame = 1
Query:   16 RPAGSTLDVVAAQTKAIADRVSS--CSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 324
            R  G+T DV+ AQ  A  + ++      +V+AYEP+WAIGTGK AT  QA E    +R  +      E+A   RI YGGSV      E  A+ D+DG LVGGASL
Sbjct:  133 RENGTTNDVIKAQITADLEGLTKEQAEKVVIAYEPIWAIGTGKTATSDQANETIAAIRAMVAEMFGQEVADKVRIQYGGSVKPNTIAEQMAKSDIDGALVGGASL 237          
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_CLOPE (Triosephosphate isomerase OS=Clostridium perfringens GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.800e-15
Identity = 47/105 (44.76%), Postives = 60/105 (57.14%), Query Frame = 1
Query:   16 RPAGSTLDVVAAQTKAIADRVSS--CSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 324
            R  G+T DV+ AQ  A  + ++      +V+AYEP+WAIGTGK AT  QA E    +R  +      E+A   RI YGGSV      E  A+ D+DG LVGGASL
Sbjct:  133 RENGTTNDVIKAQITADLEGLTKEQAEKVVIAYEPIWAIGTGKTATSDQANETIAAIRAMVAEMFGQEVADKVRIQYGGSVKPNTIAEQMAKSDIDGALVGGASL 237          
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_CLOP1 (Triosephosphate isomerase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.800e-15
Identity = 47/105 (44.76%), Postives = 60/105 (57.14%), Query Frame = 1
Query:   16 RPAGSTLDVVAAQTKAIADRVSS--CSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 324
            R  G+T DV+ AQ  A  + ++      +V+AYEP+WAIGTGK AT  QA E    +R  +      E+A   RI YGGSV      E  A+ D+DG LVGGASL
Sbjct:  133 RENGTTNDVIKAQITADLEGLTKEQAEKVVIAYEPIWAIGTGKTATSDQANETIAAIRAMVAEMFGQEVADKVRIQYGGSVKPNTIAEQMAKSDIDGALVGGASL 237          
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBB (Triosephosphate isomerase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.800e-15
Identity = 47/108 (43.52%), Postives = 59/108 (54.63%), Query Frame = 1
Query:   16 RPAGSTLDVVAAQTKAIADRVSS--CSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 333
            R +G T + +A Q K     ++      +V+AYEP+WAIGTGK AT  QA E    +R  +      E+A   RI YGGSV      E  A  D+DG LVGGASLK E
Sbjct:  133 RESGVTNNFIACQIKVDIAGLTKEQAEKVVIAYEPIWAIGTGKTATKEQANETILAIRNVVVEMYGKEVADKVRIQYGGSVKPNTITEQMAMSDIDGALVGGASLKAE 240          
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBA (Triosephosphate isomerase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.800e-15
Identity = 47/108 (43.52%), Postives = 59/108 (54.63%), Query Frame = 1
Query:   16 RPAGSTLDVVAAQTKAIADRVSS--CSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 333
            R +G T + +A Q K     ++      +V+AYEP+WAIGTGK AT  QA E    +R  +      E+A   RI YGGSV      E  A  D+DG LVGGASLK E
Sbjct:  133 RESGVTNNFIACQIKVDIAGLTKEQAEKVVIAYEPIWAIGTGKTATKEQANETILAIRNVVVEMYGKEVADKVRIQYGGSVKPNTITEQMAMSDIDGALVGGASLKAE 240          
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_STRGC (Triosephosphate isomerase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=tpiA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.963e-15
Identity = 49/119 (41.18%), Postives = 68/119 (57.14%), Query Frame = 1
Query:   13 TRPAGSTLDVVAAQTKAIADRVSS--CSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 351
            T  AG   + V AQ  A    +++   ++ V+AYEP+WAIGTGK A+   AQ++   +R  + A+   E+A   R+ YGGSV   N     A PDVDG LVGGASL+ E     +D +K
Sbjct:  134 TYEAGKAAEFVGAQVSAALAGLTAEQVASTVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_MYCGA (Triosephosphate isomerase OS=Mycoplasma gallisepticum GN=tpiA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.963e-15
Identity = 55/128 (42.97%), Postives = 74/128 (57.81%), Query Frame = 1
Query:    7 RPTRPAGSTLDVVAA-QTKAIA-DRV---------SSCSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKS 354
            RP    G TL+   A +TKA+  D++         S    +++AYEPVWAIGTGK A+   AQ+    +R  L   +S  IA    I+YGGSV   N  EL AQ D++G LVGGASL P +FI +I++
Sbjct:  124 RPILCIGETLEEYEANKTKAVLKDQLEKDLKGIDSSLLKDLIIAYEPVWAIGTGKTASSQTAQDAIAYIRTVLGLLSSKTIANELPILYGGSVTPDNVSELLAQKDINGALVGGASLDPHKFIQLIEA 251          
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_GEOTN (Triosephosphate isomerase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=tpiA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.963e-15
Identity = 51/116 (43.97%), Postives = 66/116 (56.90%), Query Frame = 1
Query:   16 RPAGSTLDVVAAQT-KAIADRV-SSCSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKS 354
            R AG T  VVA+Q  KA+A          V+AYEP+WAIGTGK +T   A  V   +R  +      E A A RI YGGSV   N  +  AQ  +DG LVGGASL+P  F+ ++++
Sbjct:  134 REAGQTNAVVASQVEKALAGLTPDQVKQAVIAYEPIWAIGTGKSSTAEDANNVCGHIRSVVARLFGAEAAEAIRIQYGGSVKPENISDFLAQEHIDGALVGGASLEPASFLKLVEA 249          
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_AGRT5 (Triosephosphate isomerase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=tpiA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.963e-15
Identity = 48/116 (41.38%), Postives = 62/116 (53.45%), Query Frame = 1
Query:   16 RPAGSTLDVVAAQTKAIADRVSSCSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAE 360
            R AG TLD++  Q        ++    V+AYEPVWAIGTG   T    +E H  +R  L      +     RI+YGGSV  AN  EL    +VDG L+GGASLK  +F+ I  + E
Sbjct:  138 RKAGQTLDILKRQLAGSLPDEATAENTVIAYEPVWAIGTGLTPTTQDVREAHAFMRDELVKRFG-DAGKTMRILYGGSVKPANALELMGVENVDGALIGGASLKAADFLSIYAAYE 252          
The following BLAST results are available for this feature:
BLAST of EY756590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_LYSSC3.800e-1542.74Triosephosphate isomerase OS=Lysinibacillus sphaer... [more]
TPIS_CLOPS3.800e-1544.76Triosephosphate isomerase OS=Clostridium perfringe... [more]
TPIS_CLOPE3.800e-1544.76Triosephosphate isomerase OS=Clostridium perfringe... [more]
TPIS_CLOP13.800e-1544.76Triosephosphate isomerase OS=Clostridium perfringe... [more]
TPIS_CLOBB3.800e-1543.52Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_CLOBA3.800e-1543.52Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_STRGC4.963e-1541.18Triosephosphate isomerase OS=Streptococcus gordoni... [more]
TPIS_MYCGA4.963e-1542.97Triosephosphate isomerase OS=Mycoplasma gallisepti... [more]
TPIS_GEOTN4.963e-1543.97Triosephosphate isomerase OS=Geobacillus thermoden... [more]
TPIS_AGRT54.963e-1541.38Triosephosphate isomerase OS=Agrobacterium tumefac... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-010-C12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756590 ID=EY756590; Name=EY756590; organism=Citrus sinensis; type=EST; length=574bp
TTCCGTCGACCCACGCGTCCGGCAGGATCTACTCTGGATGTTGTTGCTGC
ACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGTTCAACCATTGTTT
TGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCACTCCA
GCGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTTGCAAA
CACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGGATCCG
TAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTGACGGA
TTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATCATCAA
ATCTGCTGAGCTGAAGTAAAATTCTTGAGCTTTATTTCAAGGGCAGTTTG
CTGATGAAGTATTTACTGTTTGTGGATATATAGAATACGTTTGGTATAAT
TTCAGAATTACTTTTGTTTTTGATAAGCGCGACCAACTGAAACCTTTTTT
TAAACTTTTTTAATTATCTTTGTTTCCTAAGTGTTGGAGTTGAATAAGTC
TTATGTAGTGTTTACCTGCNNNNN
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