EY756590

Overview
NameEY756590
Unique NameEY756590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS1_LISMO (Triosephosphate isomerase 1 OS=Listeria monocytogenes GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.106e-14
Identity = 49/118 (41.53%), Postives = 68/118 (57.63%), Query Frame = 1
Query:   16 RPAGSTLDVVAAQTKAIADRVSSCSTI--VLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKSAE 360
            R AG T   V  Q +A    ++    I  V+AYEP+WAIGTGK +T A A E    +R  +    S + A A RI YGGSV   N  +  A+ D+DG LVGGASL+P  F+ ++++ +
Sbjct:  134 REAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDIDGALVGGASLEPASFLALLEAVK 251          
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS1_LISMF (Triosephosphate isomerase 1 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.106e-14
Identity = 49/118 (41.53%), Postives = 68/118 (57.63%), Query Frame = 1
Query:   16 RPAGSTLDVVAAQTKAIADRVSSCSTI--VLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKSAE 360
            R AG T   V  Q +A    ++    I  V+AYEP+WAIGTGK +T A A E    +R  +    S + A A RI YGGSV   N  +  A+ D+DG LVGGASL+P  F+ ++++ +
Sbjct:  134 REAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDIDGALVGGASLEPASFLALLEAVK 251          
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS1_LISIN (Triosephosphate isomerase 1 OS=Listeria innocua GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.106e-14
Identity = 49/118 (41.53%), Postives = 68/118 (57.63%), Query Frame = 1
Query:   16 RPAGSTLDVVAAQTKAIADRVSSCSTI--VLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKSAE 360
            R AG T   V  Q +A    ++    I  V+AYEP+WAIGTGK +T A A E    +R  +    S + A A RI YGGSV   N  +  A+ D+DG LVGGASL+P  F+ ++++ +
Sbjct:  134 REAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDIDGALVGGASLEPASFLALLEAVK 251          
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_SYMTH (Triosephosphate isomerase OS=Symbiobacterium thermophilum GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.444e-14
Identity = 42/81 (51.85%), Postives = 49/81 (60.49%), Query Frame = 1
Query:   88 STIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 330
            + +V+AYEPVWAIGTG+   P  AQ     +R  +     PE AA  RI YGGSV   N     AQPD+DG LVGGASL P
Sbjct:  160 ANLVIAYEPVWAIGTGRNCDPGDAQARIAAVRAVVAEAFGPEAAARVRIQYGGSVKPENMAAYMAQPDIDGALVGGASLDP 240          
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_DINSH (Triosephosphate isomerase OS=Dinoroseobacter shibae (strain DFL 12) GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.444e-14
Identity = 46/112 (41.07%), Postives = 64/112 (57.14%), Query Frame = 1
Query:   16 RPAGSTLDVVAAQTKAIADRVSSCSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDII 348
            R A +TL ++  Q        ++ + +V+AYEPVWAIGTG+V +  Q  EVH  +R  L       +  + R++YGGSV      E+ A  +VDG LVGGASLK  +F  II
Sbjct:  132 RDAANTLAIIGGQLAGSIPDTATGANLVVAYEPVWAIGTGRVPSVDQIGEVHDFIRARLEQRFGEGVGRSVRLLYGGSVKPGIAAEIFAVSNVDGALVGGASLKAADFTGII 243          
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_SYNY3 (Triosephosphate isomerase OS=Synechocystis sp. (strain PCC 6803) GN=tpiA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.886e-14
Identity = 47/106 (44.34%), Postives = 62/106 (58.49%), Query Frame = 1
Query:   16 RPAGSTLDVVAAQTKAIADRVSSCSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 333
            R AG T  V+  Q K     V   S +V+AYEP+WAIGTG      +A  V   +R+ L   T+ ++     I YGGSVN  N  E+ AQP++DG LVGGASL+P+
Sbjct:  135 RDAGETEQVIVDQVKKGLVNVDQ-SNLVIAYEPIWAIGTGDTCAATEANRVIGLIREQL---TNSQVT----IQYGGSVNANNVDEIMAQPEIDGALVGGASLEPQ 232          
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_SYNJA (Triosephosphate isomerase OS=Synechococcus sp. (strain JA-3-3Ab) GN=tpiA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.886e-14
Identity = 44/86 (51.16%), Postives = 55/86 (63.95%), Query Frame = 1
Query:   94 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDII 348
            +V+AYEP+WAIGTGK    A+A  V   +R+ L A+  P       I+YGGSV  +N  EL AQP +DG LVGGASL P EF  I+
Sbjct:  164 LVIAYEPIWAIGTGKTCAAAEANRVIGLIRQHLGADHLP-------ILYGGSVKASNIDELMAQPQIDGVLVGGASLDPQEFARIV 242          
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_METFK (Triosephosphate isomerase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=tpiA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.886e-14
Identity = 40/76 (52.63%), Postives = 51/76 (67.11%), Query Frame = 1
Query:   97 VLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 324
            V+AYEPVWAIGT + ATP QA+  H  +R+ + A   P  A + RIIYGGSVN  N  +L + PD+DG L+G  SL
Sbjct:  163 VIAYEPVWAIGTNRTATPEQARAAHSFIRERIAA-MHPGAAESVRIIYGGSVNPRNAAQLLSMPDIDGGLIGRCSL 237          
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_CLOTE (Triosephosphate isomerase OS=Clostridium tetani GN=tpiA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.886e-14
Identity = 45/103 (43.69%), Postives = 61/103 (59.22%), Query Frame = 1
Query:   25 GSTLDVVAAQTKA--IADRVSSCSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 327
            G T +VV+ Q K      +      +V+AYEP+WAIGTGK AT  +A EV   +R  + +    ++A + RI YGGSV  +  KE  +  D+DG LVGGASLK
Sbjct:  142 GVTEEVVSKQVKLGLFELKEEQVEKLVIAYEPIWAIGTGKTATSEEANEVIALIRSTVKSLYGDKVAESLRIQYGGSVKPSTIKEQMSMSDIDGALVGGASLK 244          
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_CLOB8 (Triosephosphate isomerase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=tpiA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.886e-14
Identity = 48/107 (44.86%), Postives = 59/107 (55.14%), Query Frame = 1
Query:   16 RPAGSTLDVVAAQTKAIADRVSS--CSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 330
            R  G+T  V+ AQ KA    +++     +V+AYEP+WAIGTGK AT  QA E    +R  +      E A  TRI YGGSV     K      D+DG LVGGASL P
Sbjct:  133 RENGTTNKVIEAQIKADIAGLTNEQVEKLVIAYEPIWAIGTGKTATDEQANETIKAIRAMVAEMYGSESAEKTRIQYGGSVKPNTIKAQMEMSDIDGALVGGASLVP 239          
The following BLAST results are available for this feature:
BLAST of EY756590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS1_LISMO1.106e-1441.53Triosephosphate isomerase 1 OS=Listeria monocytoge... [more]
TPIS1_LISMF1.106e-1441.53Triosephosphate isomerase 1 OS=Listeria monocytoge... [more]
TPIS1_LISIN1.106e-1441.53Triosephosphate isomerase 1 OS=Listeria innocua GN... [more]
TPIS_SYMTH1.444e-1451.85Triosephosphate isomerase OS=Symbiobacterium therm... [more]
TPIS_DINSH1.444e-1441.07Triosephosphate isomerase OS=Dinoroseobacter shiba... [more]
TPIS_SYNY31.886e-1444.34Triosephosphate isomerase OS=Synechocystis sp. (st... [more]
TPIS_SYNJA1.886e-1451.16Triosephosphate isomerase OS=Synechococcus sp. (st... [more]
TPIS_METFK1.886e-1452.63Triosephosphate isomerase OS=Methylobacillus flage... [more]
TPIS_CLOTE1.886e-1443.69Triosephosphate isomerase OS=Clostridium tetani GN... [more]
TPIS_CLOB81.886e-1444.86Triosephosphate isomerase OS=Clostridium beijerinc... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-010-C12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756590 ID=EY756590; Name=EY756590; organism=Citrus sinensis; type=EST; length=574bp
TTCCGTCGACCCACGCGTCCGGCAGGATCTACTCTGGATGTTGTTGCTGC
ACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGTTCAACCATTGTTT
TGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCACTCCA
GCGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTTGCAAA
CACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGGATCCG
TAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTGACGGA
TTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATCATCAA
ATCTGCTGAGCTGAAGTAAAATTCTTGAGCTTTATTTCAAGGGCAGTTTG
CTGATGAAGTATTTACTGTTTGTGGATATATAGAATACGTTTGGTATAAT
TTCAGAATTACTTTTGTTTTTGATAAGCGCGACCAACTGAAACCTTTTTT
TAAACTTTTTTAATTATCTTTGTTTCCTAAGTGTTGGAGTTGAATAAGTC
TTATGTAGTGTTTACCTGCNNNNN
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