EY756590

Overview
NameEY756590
Unique NameEY756590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_METCA (Triosephosphate isomerase OS=Methylococcus capsulatus GN=tpiA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.209e-22
Identity = 59/119 (49.58%), Postives = 74/119 (62.18%), Query Frame = 1
Query:   16 RPAGSTLDVVAAQTKAIAD--RVSSCSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAEL 363
            R  G TL V+ AQ   + +   V S    V+AYEPVWA+GTG+ AT  QAQEVH+ +R  L A  +PE+A A +IIYGGSV   N  EL A PD+DG L+GGASL    F+ I  S  +
Sbjct:  133 REQGRTLAVIGAQIDTVFEFAGVQSLEHAVIAYEPVWAVGTGRSATTGQAQEVHYHIRS-LIARWNPEVAQAVQIIYGGSVKPENSAELFAMPDIDGGLIGGASLDARAFLSICHSVSV 250          
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_DELAS (Triosephosphate isomerase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.209e-22
Identity = 59/117 (50.43%), Postives = 79/117 (67.52%), Query Frame = 1
Query:   16 RPAGSTLDVVAAQTKAIADRVSSC-STIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAE 360
            R AG T +VV  Q  A+  +V  C + +V+AYEPVWAIGTG+ ATP QAQ+VH  LR  L A  + + A    ++YGGS+N +N  +L AQ D+DG LVGGASLK  +F+ II +A+
Sbjct:  134 REAGQTEEVVKRQLAAVIHQVGQCINELVVAYEPVWAIGTGRTATPEQAQQVHAVLRAQLAA--ASQQADRIALLYGGSMNASNAAQLLAQADIDGGLVGGASLKAADFLTIIAAAQ 248          
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_PSEF5 (Triosephosphate isomerase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=tpiA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.191e-22
Identity = 60/117 (51.28%), Postives = 75/117 (64.10%), Query Frame = 1
Query:   16 RPAGSTLDVVAAQTKAIADR--VSSCSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 357
            R AG TL+VV  Q  +I +   V + +  V+AYEPVWAIGTG  ATP QAQ+VH  +R  L A  S E+A   R++YGGSV  AN  EL   PD+DG L+GGASL   EF  I ++A
Sbjct:  134 REAGKTLEVVGRQLGSIIEELGVGAFANAVIAYEPVWAIGTGLTATPQQAQDVHAAIRAQLAAENS-EVARGVRLLYGGSVKAANAVELFGMPDIDGGLIGGASLNADEFGAICRAA 249          
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_HAEDU (Triosephosphate isomerase OS=Haemophilus ducreyi GN=tpiA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.191e-22
Identity = 62/116 (53.45%), Postives = 76/116 (65.52%), Query Frame = 1
Query:   22 AGSTLDVVAAQTKAIADR--VSSCSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAE 360
            AG T  V A Q  AI +   V + +  V+AYEP+WAIGTGK ATPAQAQ VH  +R+ + A  S  +A    I YGGSVN  N  EL +QPD+DG LVGGASLK   F +I+K+AE
Sbjct:  138 AGQTQQVCARQIDAIINSLGVEAFNQAVIAYEPIWAIGTGKSATPAQAQAVHAFIRQHI-AEKSQAVADQLIIQYGGSVNDTNAAELFSQPDIDGALVGGASLKATAFAEIVKAAE 252          
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_CHRSD (Triosephosphate isomerase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=tpiA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.191e-22
Identity = 62/117 (52.99%), Postives = 78/117 (66.67%), Query Frame = 1
Query:   16 RPAGSTLDVVAAQT-KAIAD-RVSSCSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 357
            R AG T DVV  Q   A+A    +  + + +AYEPVWAIGTG+ ATP QAQEV   +R++  A   P +A + R+IYGGS+N AN  EL AQPD+DG LVGGASLK  +F+ I  SA
Sbjct:  133 RDAGRTRDVVLRQVGHALAPLEPAQRARVTIAYEPVWAIGTGRTATPEQAQEVMAAIREYQ-AGFDPALAQSMRLIYGGSMNAANAAELLAQPDIDGGLVGGASLKVDDFLAICHSA 248          
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_HAEIN (Triosephosphate isomerase OS=Haemophilus influenzae GN=tpiA PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.150e-22
Identity = 62/115 (53.91%), Postives = 75/115 (65.22%), Query Frame = 1
Query:   22 AGSTLDVVAAQTKAIADR--VSSCSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 357
            AG T +V A Q  A+ +   V + +  V+AYEP+WAIGTGK ATPAQAQ VH  +R  + A  S  +A    I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+A
Sbjct:  145 AGKTEEVCARQIDAVINALGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAK-SQAVAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAA 258          
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_HAEIG (Triosephosphate isomerase OS=Haemophilus influenzae (strain PittGG) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.150e-22
Identity = 62/115 (53.91%), Postives = 75/115 (65.22%), Query Frame = 1
Query:   22 AGSTLDVVAAQTKAIADR--VSSCSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 357
            AG T +V A Q  A+ +   V + +  V+AYEP+WAIGTGK ATPAQAQ VH  +R  + A  S  +A    I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+A
Sbjct:  145 AGKTEEVCARQIDAVINALGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAK-SQAVAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAA 258          
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_HAEIE (Triosephosphate isomerase OS=Haemophilus influenzae (strain PittEE) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.150e-22
Identity = 62/115 (53.91%), Postives = 75/115 (65.22%), Query Frame = 1
Query:   22 AGSTLDVVAAQTKAIADR--VSSCSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 357
            AG T +V A Q  A+ +   V + +  V+AYEP+WAIGTGK ATPAQAQ VH  +R  + A  S  +A    I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+A
Sbjct:  145 AGKTEEVCARQIDAVINALGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAK-SQAVAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAA 258          
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_HAEI8 (Triosephosphate isomerase OS=Haemophilus influenzae (strain 86-028NP) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.150e-22
Identity = 62/115 (53.91%), Postives = 75/115 (65.22%), Query Frame = 1
Query:   22 AGSTLDVVAAQTKAIADR--VSSCSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 357
            AG T +V A Q  A+ +   V + +  V+AYEP+WAIGTGK ATPAQAQ VH  +R  + A  S  +A    I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+A
Sbjct:  145 AGKTEEVCARQIDAVINALGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAK-SQAVAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAA 258          
BLAST of EY756590 vs. ExPASy Swiss-Prot
Match: TPIS_CHLP8 (Triosephosphate isomerase OS=Chlorobaculum parvum (strain NCIB 8327) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.150e-22
Identity = 62/116 (53.45%), Postives = 76/116 (65.52%), Query Frame = 1
Query:   16 RPAGSTLDVVAAQT-KAIADRVSSCSTIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 357
            R AG T  +V AQ  + +AD VS  ST+V+AYEPVWAIGTGK AT  QAQ+VH  +R  +        A   RI YGGSV  +N  EL A PD+DG L+GGASLK E F+ II++A
Sbjct:  135 REAGVTDKIVTAQVVEGLAD-VSDISTLVIAYEPVWAIGTGKTATKEQAQDVHASIRSTIEKLYGDSAARHLRIQYGGSVKPSNAAELFAMPDIDGGLIGGASLKVEDFMAIIEAA 249          
The following BLAST results are available for this feature:
BLAST of EY756590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_METCA3.209e-2249.58Triosephosphate isomerase OS=Methylococcus capsula... [more]
TPIS_DELAS3.209e-2250.43Triosephosphate isomerase OS=Delftia acidovorans (... [more]
TPIS_PSEF54.191e-2251.28Triosephosphate isomerase OS=Pseudomonas fluoresce... [more]
TPIS_HAEDU4.191e-2253.45Triosephosphate isomerase OS=Haemophilus ducreyi G... [more]
TPIS_CHRSD4.191e-2252.99Triosephosphate isomerase OS=Chromohalobacter sale... [more]
TPIS_HAEIN7.150e-2253.91Triosephosphate isomerase OS=Haemophilus influenza... [more]
TPIS_HAEIG7.150e-2253.91Triosephosphate isomerase OS=Haemophilus influenza... [more]
TPIS_HAEIE7.150e-2253.91Triosephosphate isomerase OS=Haemophilus influenza... [more]
TPIS_HAEI87.150e-2253.91Triosephosphate isomerase OS=Haemophilus influenza... [more]
TPIS_CHLP87.150e-2253.45Triosephosphate isomerase OS=Chlorobaculum parvum ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-010-C12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756590 ID=EY756590; Name=EY756590; organism=Citrus sinensis; type=EST; length=574bp
TTCCGTCGACCCACGCGTCCGGCAGGATCTACTCTGGATGTTGTTGCTGC
ACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGTTCAACCATTGTTT
TGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCACTCCA
GCGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTTGCAAA
CACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGGATCCG
TAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTGACGGA
TTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATCATCAA
ATCTGCTGAGCTGAAGTAAAATTCTTGAGCTTTATTTCAAGGGCAGTTTG
CTGATGAAGTATTTACTGTTTGTGGATATATAGAATACGTTTGGTATAAT
TTCAGAATTACTTTTGTTTTTGATAAGCGCGACCAACTGAAACCTTTTTT
TAAACTTTTTTAATTATCTTTGTTTCCTAAGTGTTGGAGTTGAATAAGTC
TTATGTAGTGTTTACCTGCNNNNN
back to top