EY756585

Overview
NameEY756585
Unique NameEY756585
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length361
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756585 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.937e-31
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 3
Query:   27 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 218
            DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  143 DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206          
BLAST of EY756585 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.937e-31
Identity = 64/70 (91.43%), Postives = 65/70 (92.86%), Query Frame = 3
Query:    9 PWVCVHDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 218
            P     DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  197 PLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266          
BLAST of EY756585 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.937e-31
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 3
Query:   27 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 218
            DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  192 DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255          
BLAST of EY756585 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.836e-31
Identity = 64/70 (91.43%), Postives = 65/70 (92.86%), Query Frame = 3
Query:    9 PWVCVHDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 218
            P     DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  196 PLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265          
BLAST of EY756585 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.836e-31
Identity = 64/70 (91.43%), Postives = 65/70 (92.86%), Query Frame = 3
Query:    9 PWVCVHDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 218
            P     DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  196 PLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265          
BLAST of EY756585 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.836e-31
Identity = 64/70 (91.43%), Postives = 65/70 (92.86%), Query Frame = 3
Query:    9 PWVCVHDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 218
            P     DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  196 PLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265          
BLAST of EY756585 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.836e-31
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 3
Query:   27 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 218
            DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  204 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267          
BLAST of EY756585 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.010e-31
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 3
Query:   27 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 218
            DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  204 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of EY756585 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.010e-31
Identity = 63/70 (90.00%), Postives = 65/70 (92.86%), Query Frame = 3
Query:    9 PWVCVHDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 218
            P     DPEAFAELKVKEIKNGRLAMFSMFGFFVQA+VTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  197 PLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266          
BLAST of EY756585 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.010e-31
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 3
Query:   27 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 218
            DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  203 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
The following BLAST results are available for this feature:
BLAST of EY756585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CB22_CUCSA2.937e-3198.44Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_TOBAC2.937e-3191.43Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB21_CUCSA2.937e-3198.44Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2C_SOLLC3.836e-3191.43Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2B_SOLLC3.836e-3191.43Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_SOLLC3.836e-3191.43Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB25_PETSP3.836e-3198.44Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB2G_SOLLC5.010e-3198.44Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB25_NICPL5.010e-3190.00Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB24_PETSP5.010e-3198.44Chlorophyll a-b binding protein 25, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-010-C07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756585 ID=EY756585; Name=EY756585; organism=Citrus sinensis; type=EST; length=361bp
CCACGCGTCCGTGGGTTTGTGTTCATGACCCGGAGGCTTTTGCTGAGCTC
AAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGG
TTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGG
CCGACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACC
AACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTT
CGGTTTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAA
TTTGAGTTGTGATTATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAG
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