EY756561

Overview
NameEY756561
Unique NameEY756561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11256 contig Csv1_Contig11256:339..989. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.449e-16
Identity = 58/172 (33.72%), Postives = 79/172 (45.93%), Query Frame = 3
Query:   12 VNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSS-----------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPTDEAKEK----ELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLSGN 479
            ++ RWAML  +G +  E  T +       W DAGK E    SS           TL  IE ++  Y+E +R  ++ +   +                 YPGG  F+PL  A     K +    E+ + RLAM+ FLGF VQ   TGKGP  N   H+SDP H TI+ T S +
Sbjct:  139 IHGRWAMLATLGAITVEWLTGV------TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRL-----------------YPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 287          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.449e-16
Identity = 59/157 (37.58%), Postives = 82/157 (52.23%), Query Frame = 3
Query:   12 VNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            ++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  102 IHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 254          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.449e-16
Identity = 59/167 (35.33%), Postives = 79/167 (47.31%), Query Frame = 3
Query:   12 VNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            ++ RWAMLG +G + PE+ +K G+      W+ AG         +Y  + +         ++  + +L  +VE  R      P     D I            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  HI+DP  N
Sbjct:  100 IHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGG--GPLGEGLDKI------------YPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVAN 252          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.449e-16
Identity = 59/168 (35.12%), Postives = 78/168 (46.43%), Query Frame = 3
Query:   12 VNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            ++SRWAMLG +G   PE+  K G+      W+ AG ++ FA                    ++  + +L  +VE  R      P     DP+            YPGG F+PL  A       E K KEL NGRLAM +  GF VQ  VTGKGP +NL  H++DP  N
Sbjct:  100 IHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAG-SQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGG--GPLGEGLDPL------------YPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVAN 252          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.811e-16
Identity = 57/156 (36.54%), Postives = 80/156 (51.28%), Query Frame = 3
Query:   12 VNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            ++ RWAMLG +G + PE+  + G+      +  G ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  102 IHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 254          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.811e-16
Identity = 58/157 (36.94%), Postives = 81/157 (51.59%), Query Frame = 3
Query:   12 VNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            ++ RWAMLG +G + PE+  + G+      W+  G ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   99 IHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKG-SQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 251          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.589e-16
Identity = 58/167 (34.73%), Postives = 79/167 (47.31%), Query Frame = 3
Query:   12 VNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            ++ RWAMLG +G + PE+F + G+      W  AG         +Y  + S         ++  + +L   VE   ++    P  V  DP+            YPGG F+PL  A   EA    K KE  NGRLAM +  GF +Q  VTGKGP ENL  H+ DP +N
Sbjct:  102 IHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVE--GYRVAGGPLGVVVDPL------------YPGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNN 254          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.912e-16
Identity = 58/157 (36.94%), Postives = 81/157 (51.59%), Query Frame = 3
Query:   12 VNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            ++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K K + NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  102 IHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 254          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.912e-16
Identity = 58/157 (36.94%), Postives = 81/157 (51.59%), Query Frame = 3
Query:   12 VNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            ++ RW MLG +G + PE+F + G+      W+ AG ++ F      ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    + KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  101 IHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAG-SQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 253          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.691e-15
Identity = 58/165 (35.15%), Postives = 82/165 (49.70%), Query Frame = 3
Query:   12 VNSRWAMLGVVGMLLPEVFTKIGIIN--APQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIK------------NPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            +++RWA+LG +G+L PE+ ++   +    P W+ AG A+ FA     ++    L H   I     ++            N GS        +  L   +  YPGG F+PL  A       E K KE+ NGRLAM + LGF VQ  VTGKGP +NL  H++DP  N
Sbjct:   85 IHARWALLGALGILTPELLSQYAGVQFGEPVWFKAG-AQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGS--------EGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVN 240          
The following BLAST results are available for this feature:
BLAST of EY756561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB4B_ARATH4.449e-1633.72Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB2A_SPIOL4.449e-1637.58Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_SOLLC4.449e-1635.33Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB215_PEA4.449e-1635.12Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_NICPL5.811e-1636.54Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_HORVU5.811e-1636.94Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_PETSP7.589e-1634.73Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB25_TOBAC9.912e-1636.94Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB21_PETSP9.912e-1636.94Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_DUNTE1.691e-1535.15Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-010-A05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756561 ID=EY756561; Name=EY756561; organism=Citrus sinensis; type=EST; length=651bp
CCACGCGTCCGGTGAATTCGCGCTGGGCCATGTTGGGGGTTGTTGGAATG
TTGTTGCCCGAAGTTTTCACAAAGATTGGAATTATTAATGCTCCTCAATG
GTATGATGCTGGGAAGGCTGAGTACTTTGCATCATCATCGACCCTTTTCG
TGATCGAGTTCATCTTGTTCCACTATGTGGAGATAAGAAGATGGCAAGAC
ATAAAGAACCCAGGAAGTGTCAACCAAGACCCCATTTTCAAGCAGTACAG
CTTGCCTCCAAACGAAGTTGGGTACCCCGGTGGCATCTTCAACCCACTCA
ACTTTGCACCCACTGACGAGGCAAAGGAGAAGGAGCTTGCCAATGGGAGA
TTGGCAATGTTGGCATTCTTGGGATTTATTGTTCAGCACAATGTGACAGG
CAAAGGGCCATTTGAAAACCTCCTGCAACACATCTCTGACCCATGGCACA
ACACCATCGTCCAGACACTAAGTGGTAATTAATCAAAGATGGATTGGCCA
TCCCGGATCCTGTTTCTTTCTTTTGTAACCATGAATCTGTAGTTTTTGAG
TGAGATTTGAGCATCAATGTAAACATGGAAACTCTCAATGTACAGGGGAA
CTATGATGGTATTTATATTATCATTTTACACCAAAAAAAAAAAAAAAAAA
A
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