EY756553

Overview
NameEY756553
Unique NameEY756553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11638 contig Csv1_Contig11638:34..933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756553 vs. ExPASy Swiss-Prot
Match: RL2_PARL1 (50S ribosomal protein L2 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.086e-21
Identity = 69/225 (30.67%), Postives = 106/225 (47.11%), Query Frame = 3
Query:   84 FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGXNHQHIG--HASTXXRDAPPGQK 740
            F+   H R     +R++DF  R   +   V  + +DP R A +A V +        +    +A + +  G  V  G +  +  GN +P+ +IP G +V NVE   G  G +AR++G Y  ++    D     ++L SG ++++P+ C A IG V+    +   + KAG         RN W    P VRGV MNPV+HPHGG   +  G  H  T       G+K
Sbjct:   53 FRGGGHKRS----YRTVDFKRRRYDVPATVERLEYDPNRTAFIALVKYEDG-----ELAYILAPQRLQPGDVVISGSRVDVKPGNAMPLANIPVGTIVHNVEMKPGKGGQIARSAGTYVQLVGR--DQGYALLRLSSGEQRMVPATCMASIGAVSNPDHSNITIAKAG---------RNRWLGKRPHVRGVVMNPVDHPHGGGEGRTSGGRHPVTPWGKPTKGKK 257          
BLAST of EY756553 vs. ExPASy Swiss-Prot
Match: RL2_OENOB (50S ribosomal protein L2 OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.086e-21
Identity = 72/206 (34.95%), Postives = 103/206 (50.00%), Query Frame = 3
Query:   99 HHRKG-PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA-YHKFRVKRNCWPKVRGVAMNPVEHPHGGXNHQ-HIGHAS 707
            HH  G   Q+R +DF          V  I +DP R A +A + +         K   +A +G+  G  V  G  A + VGN LP+ +IPEG ++ N+E   G  G LAR++G  A I+  +       ++L SG  ++IP+  RA IG+V   G  E  L+  G A   ++R K    P VRG  MNP +HPHGG   +  +GH S
Sbjct:   53 HHGGGHKQQYRIIDFKRIKDDKTATVKAIEYDPNRTANIALLVYEDGV-----KSYILAPKGLEAGTKVQSGPDADIKVGNALPLGNIPEGTLIHNIELKPGKGGQLARSAGTSAQILGKDDAGKYVIIRLSSGEVRMIPATSRATIGEV---GNAEHSLISWGKAGRSRWRGKT---PHVRGSVMNPNDHPHGGGEGKAPVGHPS 247          
BLAST of EY756553 vs. ExPASy Swiss-Prot
Match: RL2_MYCMS (50S ribosomal protein L2 OS=Mycoplasma mycoides subsp. mycoides SC GN=rplB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.086e-21
Identity = 82/268 (30.60%), Postives = 124/268 (46.27%), Query Frame = 3
Query:    9 PAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPH-GGXNHQHIGHASTXXRDAPPGQKVGLIAARKTGXLKXQLL 791
            P +SL  SK      +A R   G +    T H+ G    ++R +DF      + G ++ I +DP R A +  + +        +K   + A+GM  G  V   + A + VGNV P+++IPEG ++ NVE   G  G +AR++G    ++  + D     ++L SG  + + + C A IG+V   G  E  L+  G A       RN W    P VRG  MNP +HPH GG     IG  S      P G+K   +  R T     +L+
Sbjct:   31 PEKSLVVSKNS----KAGRNNRGLIT---TRHKGGGHKQKYRIIDFKRNKRDIFGTISTIEYDPNRNAFICLINYVDG-----EKRYILFAKGMQVGMKVVASENADIKVGNVAPLKNIPEGTLLHNVELKPGKGGQIARSAGSSVQLLGKDDDGKYVTLRLSSGEVRKVLAECYATIGEV---GNEEYNLVNWGKA------GRNRWRGIRPTVRGSVMNPNDHPHGGGEGRAPIGRKSPV---TPWGKKALGVKTRNTKKTSEKLI 274          
BLAST of EY756553 vs. ExPASy Swiss-Prot
Match: RL2_LACLS (50S ribosomal protein L2 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.086e-21
Identity = 71/205 (34.63%), Postives = 101/205 (49.27%), Query Frame = 3
Query:   99 HHRKG-PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPH-GGXNHQHIGHAS 707
            HH  G   ++R +DF      +   VA I +DP R A +A + + +       K   +AA+G+  G  V  G  A + VGN LP+ +IP G ++ N+E   G  G L R++G  A ++    +   T V+L SG  ++I S CRA IG V    ++   L KAG   H         P VRG  MNP +HPH GG   Q +G  S
Sbjct:   53 HHGGGHKRKYRMIDFKRTTDNVVAKVATIEYDPNRTANIALIVYANGV-----KSYILAAKGLEVGMTVVSGPDADIKVGNALPLANIPVGTLIHNIELKPGKGGQLVRSAGASAQVL--GSEGKYTLVRLQSGEVRMILSTCRATIGVVGNEQQSLINLGKAGRTRH-----MGIRPTVRGSVMNPNDHPHGGGEGRQPVGRKS 245          
BLAST of EY756553 vs. ExPASy Swiss-Prot
Match: RL2_LACLM (50S ribosomal protein L2 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.086e-21
Identity = 71/205 (34.63%), Postives = 101/205 (49.27%), Query Frame = 3
Query:   99 HHRKG-PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPH-GGXNHQHIGHAS 707
            HH  G   ++R +DF      +   VA I +DP R A +A + + +       K   +AA+G+  G  V  G  A + VGN LP+ +IP G ++ N+E   G  G L R++G  A ++    +   T V+L SG  ++I S CRA IG V    ++   L KAG   H         P VRG  MNP +HPH GG   Q +G  S
Sbjct:   53 HHGGGHKRKYRMIDFKRTTDNVVAKVATIEYDPNRTANIALIVYANGV-----KSYILAAKGLEVGMTVVSGPDADIKVGNALPLANIPVGTLIHNIELKPGKGGQLVRSAGASAQVL--GSEGKYTLVRLQSGEVRMILSTCRATIGVVGNEQQSLINLGKAGRTRH-----MGIRPTVRGSVMNPNDHPHGGGEGRQPVGRKS 245          
BLAST of EY756553 vs. ExPASy Swiss-Prot
Match: RL2_LACDB (50S ribosomal protein L2 OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.086e-21
Identity = 75/224 (33.48%), Postives = 112/224 (50.00%), Query Frame = 3
Query:   21 LSPSKEMGRVIRAQRKGAGSVFKSH--THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA-YHKFRVKRNCWPKVRGVAMNPVEHPHGG 677
            ++ SK    ++ ++ K AG     H    HR G    Q+R +DF      +K  +  I +DP R A +A + +         K   +A +G+  G +V  G  A + VGN LP+++IP G  V N+E   G  G +AR++G  A ++    D   T+V+L SG  + I S CRA IG V   G  +  L+  G A   ++  KR   P+ RG  MNP +HPHGG
Sbjct:   24 ITKSKPEKTLLASKSKTAGRNSYGHITVRHRGGGHKQQYRIIDFKRTKDNVKAKIVAIEYDPNRSANIALLHYTDG-----TKAYILAPKGLTVGSWVESGVDADIKVGNALPLKNIPTGTEVHNIELKPGKGGQIARSAGTSAQVL--GVDGKYTQVRLQSGEVREILSECRATIGAV---GNEQHSLINIGKAGRSRWMGKR---PQSRGSVMNPNDHPHGG 234          
BLAST of EY756553 vs. ExPASy Swiss-Prot
Match: RL2_LACDA (50S ribosomal protein L2 OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.086e-21
Identity = 75/224 (33.48%), Postives = 112/224 (50.00%), Query Frame = 3
Query:   21 LSPSKEMGRVIRAQRKGAGSVFKSH--THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA-YHKFRVKRNCWPKVRGVAMNPVEHPHGG 677
            ++ SK    ++ ++ K AG     H    HR G    Q+R +DF      +K  +  I +DP R A +A + +         K   +A +G+  G +V  G  A + VGN LP+++IP G  V N+E   G  G +AR++G  A ++    D   T+V+L SG  + I S CRA IG V   G  +  L+  G A   ++  KR   P+ RG  MNP +HPHGG
Sbjct:   24 ITKSKPEKTLLASKSKTAGRNSYGHITVRHRGGGHKQQYRIIDFKRTKDNVKAKIVAIEYDPNRSANIALLHYTDG-----TKAYILAPKGLTVGSWVESGVDADIKVGNALPLKNIPTGTEVHNIELKPGKGGQIARSAGTSAQVL--GVDGKYTQVRLQSGEVREILSECRATIGAV---GNEQHSLINIGKAGRSRWMGKR---PQSRGSVMNPNDHPHGG 234          
BLAST of EY756553 vs. ExPASy Swiss-Prot
Match: RL2_EHRCJ (50S ribosomal protein L2 OS=Ehrlichia canis (strain Jake) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.086e-21
Identity = 68/189 (35.98%), Postives = 98/189 (51.85%), Query Frame = 3
Query:  123 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 677
            +R +DF      +   V  + +DP R A +A +++        +K   IA  G+  G  V  G+ + ++ GN L ++SIP G  V NVE   G+ GV+AR++G YA ++S   D     ++L SG  + + S CRA IG V+        L KAG         RN W    P VRGVAMNP++HPHGG
Sbjct:   62 YRIIDFKRNKVGVSATVERLEYDPNRTAFIALLSYDDG-----EKSYIIAPNGLKKGDVVISGEGSDILPGNCLMLKSIPVGTFVHNVELRPGNGGVIARSAGTYAQLMS--KDGVYVLLRLSSGEIRKVLSDCRATIGIVSNLDNQNVKLGKAG---------RNRWLGIRPTVRGVAMNPIDHPHGG 234          
BLAST of EY756553 vs. ExPASy Swiss-Prot
Match: RL2_DESRM (50S ribosomal protein L2 OS=Desulfotomaculum reducens (strain MI-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.086e-21
Identity = 63/185 (34.05%), Postives = 93/185 (50.27%), Query Frame = 3
Query:  123 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 677
            FR +DF      +   VA I +DP R A +A + +        +K   +A  G+  G  V  G  A + VGN LP+R+IP G +V N+E + G    + R++G  A +++   +     ++LPSG  +++   CRA IGQV         + KAG + H         P VRG  MNPV+HPHGG
Sbjct:   62 FRIIDFKRNKDGIPAKVASIEYDPNRSARIALLNYADG-----EKRYILAPVGLEVGVIVESGPDADIKVGNCLPLRNIPVGTMVHNIELYPGAGAQMVRSAGAAAQLMA--KEGKYANLRLPSGEMRLVLQECRATIGQVGNLEHENVTIGKAGRSRH-----LGIRPTVRGKVMNPVDHPHGG 234          
BLAST of EY756553 vs. ExPASy Swiss-Prot
Match: RL2_CHLCH (50S ribosomal protein L2 OS=Chlorobium chlorochromatii (strain CaD3) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.086e-21
Identity = 69/229 (30.13%), Postives = 107/229 (46.72%), Query Frame = 3
Query:   69 GAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGXNHQHIGHASTXXRDAPPGQ 737
            G  S  +  + HR G     +R +DF      +   VA I +DP R A +A + +        +K   +A +G+  G  V  G+K  +  GN +P+++IP G  + N+E   G  G + R++G +AV+ +   + D   +KLPSG  + +   CRA IG +         L KAG         R+ W    P+ RG+AMNPV+HP GG   +           +P GQ
Sbjct:   42 GRNSAGRKTSRHRGGGHKRHYRIIDFKRNKDGIVATVAAIEYDPNRSARIALLHYIDG-----EKRYILAPKGLKVGDKVESGEKVEIKTGNTMPMKNIPLGTDIHNIEMKAGKGGQIVRSAGAFAVLAAR--EGDYVTLKLPSGEIRKVRVECRATIGVIGNADHENIDLGKAG---------RSRWLGIRPQTRGMAMNPVDHPMGGGEGKSKSGGGRKHPKSPWGQ 254          
The following BLAST results are available for this feature:
BLAST of EY756553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_PARL16.086e-2130.6750S ribosomal protein L2 OS=Parvibaculum lavamenti... [more]
RL2_OENOB6.086e-2134.9550S ribosomal protein L2 OS=Oenococcus oeni (strai... [more]
RL2_MYCMS6.086e-2130.6050S ribosomal protein L2 OS=Mycoplasma mycoides su... [more]
RL2_LACLS6.086e-2134.6350S ribosomal protein L2 OS=Lactococcus lactis sub... [more]
RL2_LACLM6.086e-2134.6350S ribosomal protein L2 OS=Lactococcus lactis sub... [more]
RL2_LACDB6.086e-2133.4850S ribosomal protein L2 OS=Lactobacillus delbruec... [more]
RL2_LACDA6.086e-2133.4850S ribosomal protein L2 OS=Lactobacillus delbruec... [more]
RL2_EHRCJ6.086e-2135.9850S ribosomal protein L2 OS=Ehrlichia canis (strai... [more]
RL2_DESRM6.086e-2134.0550S ribosomal protein L2 OS=Desulfotomaculum reduc... [more]
RL2_CHLCH6.086e-2130.1350S ribosomal protein L2 OS=Chlorobium chlorochrom... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-009-H09-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756553 ID=EY756553; Name=EY756553; organism=Citrus sinensis; type=EST; length=901bp
CCACGCGTCCGGCTCAGTCTCTTTCGCCCTCTAAAGAAATGGGTCGTGTG
ATTCGCGCACAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCACACCCA
CCACCGTAAGGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGAGCGTA
ATGGTTACCTCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGGGTCGT
GGTGCCCCGCTGGCCCGAGTTACCTTTCGTCACCCTTTTCGCTACATGAA
ACAAAAGGAGCTTTTCATTGCCGCCGAGGGTATGTACACGGGTCAGTTCG
TGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGTAATGTGTTGCCCGTT
AGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGCATCATGTTGG
TGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCCGTTATCATCA
GTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCCATCTGGTGCC
AAAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGCAGGTTGCCGG
CGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCATACCACA
AATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGTGGCCATG
AACCCAGTGGAGCATCCTCATGGAGGANGTAACCACCAGCACATTGGTCA
TGCTAGCACTGNTANGCGTGATGCTCCCCCTGGCCAGAAGGTTGGTCTTA
TTGCAGCCAGGAAGACTGGTCNGCTCAAANGACAGCTGCTGCCACTGCAN
GCAAGGGCGACAGGCTAAANTCTTTGTGTTACACAATCGTCTTTTATCGC
GATCTGGATTTTACTTTCCTGCTGATCATACCTGGAAAAATTGTTCAGAT
T
back to top