EY756536

Overview
NameEY756536
Unique NameEY756536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11050 contig Csv1_Contig11050:689..1578. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: AB13C_ARATH (ABC transporter C family member 13 OS=Arabidopsis thaliana GN=ABCC13 PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.675e-39
Identity = 85/213 (39.91%), Postives = 127/213 (59.62%), Query Frame = 1
Query:   13 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFG 651
            ++ +RY S  P  L  I+ +I GG  +GV+GRTG+GKS+++   FRL                       RS   ++PQ P LF+G++R N+DP+G   D  IW+ L++C++K  V +    LDS V +SG ++SVGQRQLLCL R +LK S++L +DE TA++D  T + +   I  E    T+I+IAHRI TV+D D ++++D G   E G
Sbjct:  962 NVTMRYISTLPPALTQISFTIQGGMHVGVIGRTGAGKSSILNALFRLTPVCSGEILVDGKNISHLPIRELRSCLAVVPQSPFLFQGSLRDNLDPLGLSEDWRIWEILDKCKVKAAVESVGG-LDSYVKESGCSFSVGQRQLLCLARALLKSSKILCLDECTANIDVHTASLLHNTISSECKGVTVITIAHRISTVVDLDSILILDRGILVEQG 1173          
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: CFTR_HORSE (Cystic fibrosis transmembrane conductance regulator OS=Equus caballus GN=CFTR PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.314e-39
Identity = 79/216 (36.57%), Postives = 128/216 (59.26%), Query Frame = 1
Query:    7 VRDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGS 654
            V+DL  +Y      +L+ I+ SI  G+++G++GRTGSGKSTL+  F RL+  +                   R  FG+IPQ+  +F GT R N+DP GQ++D+EIWK  +   L+ V+   P KLD ++ D G+  S G +QL+CL R +L  +++L +DE +A +D  T   I+R +++ FA CT+I   HRI  +++C R +V++    +++ S
Sbjct: 1213 VKDLTAKYTDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYGQWNDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGNVLSHGHKQLICLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDS 1427          
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: CFTR_DIDMA (Cystic fibrosis transmembrane conductance regulator OS=Didelphis marsupialis virginiana GN=CFTR PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.418e-38
Identity = 81/216 (37.50%), Postives = 126/216 (58.33%), Query Frame = 1
Query:    7 VRDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGS 654
            V+DL  +Y      VL+ I+ SI  G+++G++GRTGSGKSTL+  F RL+  +                   R  FG+IPQ+  +F GT R N+DP GQ+SD E+WK  +   LK V+   P KLD ++ D G   S G +QL+CL R +L  +++L +DE +A +D  T   I+R+++  FA CT+I   HRI  +++C R +V++    +++ S
Sbjct: 1214 VKDLTAKYTDGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLAAFLRLLN-TEGEMQIDGVSWDSIPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGQWSDHELWKVADEVGLKSVIEQFPGKLDFVLVDGGYVLSHGHKQLICLARSVLSKAKILLLDEPSAHLDPITYQIIRRVLKNAFANCTVILSEHRIEAMLECQRFLVIEDNKVRQYES 1428          
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: CFTR_DASNO (Cystic fibrosis transmembrane conductance regulator OS=Dasypus novemcinctus GN=CFTR PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.418e-38
Identity = 80/216 (37.04%), Postives = 127/216 (58.80%), Query Frame = 1
Query:    7 VRDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGS 654
            V+DL  +Y      +L+ I+ SI  G+++G++GRTGSGKSTL+  F RL+  +                   R  FG+IPQ+  +F GT R N+DP GQ+SD+EIWK  +   L+ V+   P KLD ++ D G   S G +QL+CL R +L  +++L +DE +A +D  T   I+R +++ FA CT+I   HRI  +++C R +V++    +++ S
Sbjct: 1214 VKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TKGEIQIDGVSWDSITLQEWRKAFGVIPQKVFIFSGTFRKNLDPYGQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILCEHRIEAMLECQRFLVIEENKVRQYDS 1428          
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: CFTR_BOVIN (Cystic fibrosis transmembrane conductance regulator OS=Bos taurus GN=CFTR PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.852e-38
Identity = 80/216 (37.04%), Postives = 127/216 (58.80%), Query Frame = 1
Query:    7 VRDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGS 654
            V+DL  +Y      +L+ I+ SI  G+++G++GRTGSGKSTL+  F RL+  +                   R  FG+IPQ+  +F GT R N+DP GQ+SD+EIWK  +   L+ V+   P KLD ++ D G   S G +QL+CL R +L  +++L +DE +A +D  T   I+R +++ FA CT+I   HRI  +++C R +V++    +++ S
Sbjct: 1213 VKDLTAKYTDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLLAFLRLLN-TKGEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYGQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFANCTVILSEHRIEAMLECQRFLVIEENKVRQYDS 1427          
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: CFTR_TRIVU (Cystic fibrosis transmembrane conductance regulator OS=Trichosurus vulpecula GN=CFTR PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.419e-38
Identity = 81/216 (37.50%), Postives = 126/216 (58.33%), Query Frame = 1
Query:    7 VRDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGS 654
            V+DL  +Y      VL+ I+ SI  G+++G++GRTGSGKSTL+  F RL+  +                   R  FG+IPQ+  +F GT R N+DP GQ+SD E+WK  +   LK V+   P KLD ++ D+G   S G +QL+CL R +L  +++L +DE +A +D  T   I+R ++  FA CT+I   HRI  +++C R +V++    +++ S
Sbjct: 1210 VKDLTAKYIDGGNAVLENISFSISSGQRVGLLGRTGSGKSTLLAAFLRLLN-TQGDIQIDGVSWDSVPLQQWRKAFGVIPQKVFIFSGTFRKNLDPYGQWSDHELWKVADEVGLKSVIEQFPGKLDFVLVDAGCVLSHGHKQLICLARSVLSKAKILLLDEPSAHLDPITYQIIRRALKNAFADCTVILSEHRIEAMLECQRFLVIEESKVRQYES 1424          
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: CFTR_MUNRE (Cystic fibrosis transmembrane conductance regulator OS=Muntiacus reevesi GN=CFTR PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.159e-38
Identity = 80/216 (37.04%), Postives = 127/216 (58.80%), Query Frame = 1
Query:    7 VRDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGS 654
            V+DL  +Y      +L+ I+ SI  G+++G++GRTGSGKSTL+  F RL+  +                   R  FG+IPQ+  +F GT R N+DP GQ+SD+EIWK  +   L+ V+   P KLD ++ D G   S G +QL+CL R +L  +++L +DE +A +D  T   I+R +++ FA CT+I   HRI  +++C R +V++    +++ S
Sbjct: 1213 VKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLLAFLRLLN-TKGEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYGQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDS 1427          
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: CFTR_MUNMU (Cystic fibrosis transmembrane conductance regulator OS=Muntiacus muntjak GN=CFTR PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.159e-38
Identity = 80/216 (37.04%), Postives = 127/216 (58.80%), Query Frame = 1
Query:    7 VRDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGS 654
            V+DL  +Y      +L+ I+ SI  G+++G++GRTGSGKSTL+  F RL+  +                   R  FG+IPQ+  +F GT R N+DP GQ+SD+EIWK  +   L+ V+   P KLD ++ D G   S G +QL+CL R +L  +++L +DE +A +D  T   I+R +++ FA CT+I   HRI  +++C R +V++    +++ S
Sbjct: 1213 VKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLLAFLRLLN-TKGEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYGQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDS 1427          
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: CFTR_PIG (Cystic fibrosis transmembrane conductance regulator OS=Sus scrofa GN=CFTR PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 4.126e-38
Identity = 81/216 (37.50%), Postives = 127/216 (58.80%), Query Frame = 1
Query:    7 VRDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGS 654
            V+DL  +Y      VL+ I+ SI  G+++G++GRTGSGKSTL+  F RL+  +                   R  FG+IPQ+  +F GT R N+DP GQ++D+EIWK  E   L+ V+   P KLD ++ D G   S G +QL+CL R +L  +++L +DE +A +D  T   I+R +++ FA CT+I   HRI  +++C R +V++    +++ S
Sbjct: 1214 VKDLTAKYVDGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLLAFLRLLN-TEGEIQVDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYGQWNDQEIWKVAEEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLGKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDS 1428          
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: CFTR_MUSPF (Cystic fibrosis transmembrane conductance regulator OS=Mustela putorius furo GN=CFTR PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 4.126e-38
Identity = 79/216 (36.57%), Postives = 127/216 (58.80%), Query Frame = 1
Query:    7 VRDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGS 654
            V+DL  +Y      +L+ I+ SI  G+++G++GRTGSGKSTL+  F RL+  +                   R  FG+IPQ+  +F GT R N+DP GQ++D+EIWK  +   L+ V+   P KLD ++ D G   S G +QL+CL R +L  +++L +DE +A +D  T   I+R +++ FA CT+I   HRI  +++C R +V++    +++ S
Sbjct: 1216 VKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLQEWRKAFGVIPQKVFIFSGTFRKNLDPYGQWNDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDS 1430          
The following BLAST results are available for this feature:
BLAST of EY756536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AB13C_ARATH1.675e-3939.91ABC transporter C family member 13 OS=Arabidopsis ... [more]
CFTR_HORSE8.314e-3936.57Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_DIDMA1.418e-3837.50Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_DASNO1.418e-3837.04Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_BOVIN1.852e-3837.04Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_TRIVU2.419e-3837.50Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_MUNRE3.159e-3837.04Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_MUNMU3.159e-3837.04Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_PIG4.126e-3837.50Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_MUSPF4.126e-3836.57Cystic fibrosis transmembrane conductance regulato... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-009-G04-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756536 ID=EY756536; Name=EY756536; organism=Citrus sinensis; type=EST; length=888bp
CCACGCGTCCGAGACTTGCAGGTCAGATATCGCTCCAACACTCCTCTGGT
TCTCAAAGGTATTACACTCAGCATTCACGGGGGAGAGAAGATTGGTGTAG
TTGGGCGTACAGGAAGTGGGAAGTCAACTTTAATTCAAGTTTTCTTTAGG
CTGGTGGAGCCTTCAGGAGGGAGAATCATTATTGATGGAATCGACATTTC
ATTGTTGGGGCTTCATGACCTAAGGTCTCGCTTTGGGATCATTCCTCAAG
AACCTGTCCTTTTTGAAGGAACTGTGAGAAGCAACATTGATCCAATTGGT
CAGTATTCAGATGAAGAAATCTGGAAGAGCCTCGAGCGATGTCAACTTAA
AGATGTGGTAGCTGCAAAGCCTGATAAACTCGATTCTTTAGTGGCCGATA
GTGGTGACAACTGGAGCGTGGGACAAAGGCAGCTTCTTTGTCTGGGAAGG
GTTATGCTAAAGCACAGCCGGCTCTTGTTTATGGATGAGGCGACGGCTTC
TGTTGATTCACAAACTGATGCTGAAATTCAAAGGATCATTCGAGAGGAGT
TTGCTGCCTGTACAATTATCAGCATTGCTCACAGGATACCCACAGTCATG
GATTGTGATAGAGTTATAGTTGTTGATGCAGGATGGGCGAAAGAATTTGG
CAGCCATCCAGGTTGCTTGAGAGCCATCACTCTTTGGAGCATTGGTGCAG
GAGTATGCCAACCGATCGGCAGAACTGTAGGAACAATCCTTTGCACTTGA
TGNTGGGTGAAAAGAGTTTTCTGTGATGGAATGCCTATGAGTTTAGGACC
ACCTGTGACTGGCATGAAAGATCACATTCCTCGCTCAAAGGTGCAGCAAA
GAACTTCTTCTGATATGCATGGAATTTAGTAATACTCT
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