EY756536

Overview
NameEY756536
Unique NameEY756536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11050 contig Csv1_Contig11050:689..1578. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: CFTR_MICMU (Cystic fibrosis transmembrane conductance regulator OS=Microcebus murinus GN=CFTR PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.389e-38
Identity = 80/216 (37.04%), Postives = 126/216 (58.33%), Query Frame = 1
Query:    7 VRDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGS 654
            V+DL  RY      +L+ I+ SI  G+++G++GRTGSGKSTL+  F RL+  +                   R  FG+IPQ+  +F GT R N+DP  Q+SD+EIWK  +   L+ V+   P KLD ++ D G   S G +QL+CL R +L  +++L +DE +A +D  T   I+R +++ FA CT+I   HRI  +++C R +V++    +++ S
Sbjct: 1213 VKDLTARYLDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILCEHRIEAMLECQRFLVIEENNVRQYDS 1427          
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: CFTR_CANFA (Cystic fibrosis transmembrane conductance regulator OS=Canis familiaris GN=CFTR PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 5.389e-38
Identity = 80/216 (37.04%), Postives = 127/216 (58.80%), Query Frame = 1
Query:    7 VRDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGS 654
            V+DL  +Y      +L+ I+ SI  G+++G++GRTGSGKSTL+    RLV                      R+ FG+IPQ+  +F GT R N+DP GQ++D+EIWK  +   L+ V+   P KLD ++ D G   S G +QL+CL R +L+ +++L +DE +A +D  T   I+R +++ FA CT+I   HRI  +++C R +V++    ++F S
Sbjct: 1215 VKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSALLRLVNTEGEIQIDGVSWDSIPLQEWRRA-FGVIPQKVFIFSGTFRKNLDPYGQWNDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLRKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQRFLVIEDSRLRQFES 1429          
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: CFTR_OTOGA (Cystic fibrosis transmembrane conductance regulator OS=Otolemur garnettii GN=CFTR PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.192e-38
Identity = 79/216 (36.57%), Postives = 127/216 (58.80%), Query Frame = 1
Query:    7 VRDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGS 654
            V+DL  RY  +   +L+ I+ SI  G+++G++GRTG+GKSTL+  F RL+  +                   R  FG+IPQ+  +F GT R N+DP  Q+SD+EIWK  +   L+ V+   P KLD ++ D G   S G +QL+CL R +L  +++L +DE +A +D  T   I+R +++ FA CT+I   HRI  +++C R +V++    +++ S
Sbjct: 1214 VKDLTARYIDSGNAILENISFSISPGQRVGLLGRTGAGKSTLLSAFLRLLN-TEGDIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILCEHRIEAMLECQRFLVIEENKVRQYDS 1428          
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: CFTR_ORNAN (Cystic fibrosis transmembrane conductance regulator OS=Ornithorhynchus anatinus GN=CFTR PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.192e-38
Identity = 78/216 (36.11%), Postives = 126/216 (58.33%), Query Frame = 1
Query:    7 VRDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGS 654
            V+DL  +Y    P +L  I+ SI  G+++G++GRTGSGKSTL+  F RL+  +                   R  FG+IPQ+  +F G+ R N+DP GQ++D+E+WK  E   LK V+   P +LD ++ D G   S G RQL+CL R +L  +++L +DE +A +D  T   I++ +++ F  CT+I   HRI  +++C R +V++    +++ S
Sbjct: 1214 VQDLTAKYLDGGPAILDNISFSISSGQRVGLLGRTGSGKSTLLFAFLRLLN-TEGDIRIDGISWDAVPVQQWRKAFGVIPQKVFIFSGSFRKNLDPYGQWTDQELWKVAEEVGLKSVIEQFPGQLDFVLIDGGYVLSHGHRQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFTNCTVILSEHRIEAMLECQRFLVIEENKVRQYES 1428          

HSP 2 Score: 68.1662 bits (165), Expect = 7.334e-11
Identity = 51/206 (24.76%), Postives = 97/206 (47.09%), Query Frame = 1
Query:   43 PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKS-LERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI-QRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGS 654
            P VLK I+  I  G+ + V G TG+GK++L+ +    +EP                      R    PQ   +  GT++ NI   G   DE  ++S ++ CQL++ ++   +K ++++ + G   S GQR  + L R + K + L  +D     +D  T+ EI +  + +  A  T I +  ++  +   D+++++  G    +G+
Sbjct:  438 PPVLKDISFKIEKGQLLAVAGSTGAGKTSLLMMIMGELEP-------------LEGKIKHSGRISFSPQFSWIMPGTIKENI-VFGVSFDEYRYRSVIKACQLEEEISKFAEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSCYFYGA 629          
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: CFTR_ATEAB (Cystic fibrosis transmembrane conductance regulator OS=Atelerix albiventris GN=CFTR PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.201e-37
Identity = 79/216 (36.57%), Postives = 127/216 (58.80%), Query Frame = 1
Query:    7 VRDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGS 654
            V+DL  +Y  +   +L+ I+ SI  G+++G++GRTGSGKSTL+  F RL+  +                   R  FG+IPQ+  +F GT R N+DP  Q++D+EIWK  +   L+ V+   P KLD ++ D G   S G +QL+CL R +L  +++L +DE +A +D  T   I+R I++ FA CT+I   HRI  +++C R +V++    +++ S
Sbjct: 1215 VKDLTAKYIESGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWNDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTIKQAFADCTVILCEHRIEAMLECQRFLVIEENKVRQYDS 1429          
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: CFTR_PONAB (Cystic fibrosis transmembrane conductance regulator OS=Pongo abelii GN=CFTR PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.568e-37
Identity = 78/216 (36.11%), Postives = 126/216 (58.33%), Query Frame = 1
Query:    7 VRDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGS 654
            V+DL  +Y      +L+ I+ SI  G+++G++GRTGSGKSTL+  F RL+  +                   R  FG+IPQ+  +F GT R N+DP  Q+SD+EIWK  +   L+ V+   P KLD ++ D G   S G +QL+CL R +L  +++L +DE +A +D  T   I+R +++ FA CT+I   HRI  +++C + +V++    +++ S
Sbjct: 1212 VKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1426          
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: CFTR_HUMAN (Cystic fibrosis transmembrane conductance regulator OS=Homo sapiens GN=CFTR PE=1 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 1.568e-37
Identity = 78/216 (36.11%), Postives = 126/216 (58.33%), Query Frame = 1
Query:    7 VRDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGS 654
            V+DL  +Y      +L+ I+ SI  G+++G++GRTGSGKSTL+  F RL+  +                   R  FG+IPQ+  +F GT R N+DP  Q+SD+EIWK  +   L+ V+   P KLD ++ D G   S G +QL+CL R +L  +++L +DE +A +D  T   I+R +++ FA CT+I   HRI  +++C + +V++    +++ S
Sbjct: 1212 VKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1426          
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: CFTR_GORGO (Cystic fibrosis transmembrane conductance regulator OS=Gorilla gorilla gorilla GN=CFTR PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.568e-37
Identity = 78/216 (36.11%), Postives = 126/216 (58.33%), Query Frame = 1
Query:    7 VRDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGS 654
            V+DL  +Y      +L+ I+ SI  G+++G++GRTGSGKSTL+  F RL+  +                   R  FG+IPQ+  +F GT R N+DP  Q+SD+EIWK  +   L+ V+   P KLD ++ D G   S G +QL+CL R +L  +++L +DE +A +D  T   I+R +++ FA CT+I   HRI  +++C + +V++    +++ S
Sbjct: 1212 VKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1426          
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: ABC1_SCHPO (ATP-binding cassette transporter abc1 OS=Schizosaccharomyces pombe GN=abc1 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.568e-37
Identity = 89/224 (39.73%), Postives = 125/224 (55.80%), Query Frame = 1
Query:    7 VRDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDK--------LDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGS 654
            +++L V Y      VL+ I L I   EKI +VGRTGSGKST+     R                        R R  +IPQ+PVL  GTVRSN+DP  +Y D E+ + L+    + +V A            LD+ V   G N+S GQRQ+L L R +++ SR++ +DE+TASVD  TD  IQ+++R  F   T++ IAHRI T++D D+V+V+D+G   EFGS
Sbjct: 1182 IKNLTVSYSIGQAAVLEDINLEILPKEKIAIVGRTGSGKSTMGLTLLRFTMIMSGAVEVDGIDINSLDLEVLRQRISLIPQDPVLISGTVRSNLDPFEEYGDGELNEILKTASCESLVQASNKNSLDAFAIHLDTPVDSGGVNFSSGQRQILALARALVRKSRIVILDESTASVDDTTDRRIQQMLRAAFKHATVLCIAHRIKTIVDYDKVLVLDSGKTVEFGS 1405          
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: CFTR_SHEEP (Cystic fibrosis transmembrane conductance regulator OS=Ovis aries GN=CFTR PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 2.675e-37
Identity = 79/216 (36.57%), Postives = 126/216 (58.33%), Query Frame = 1
Query:    7 VRDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGS 654
            V+DL  +Y      +L+ I+ SI  G+++G++GRTGSGKSTL+  F RL+  +                   R  FG+IPQ+  +F GT R N+DP  Q+SD+EIWK  +   L+ V+   P KLD ++ D G   S G +QL+CL R +L  +++L +DE +A +D  T   I+R +++ FA CT+I   HRI  +++C R +V++    +++ S
Sbjct: 1213 VKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLLAFLRLLN-TKGEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDS 1427          
The following BLAST results are available for this feature:
BLAST of EY756536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CFTR_MICMU5.389e-3837.04Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_CANFA5.389e-3837.04Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_OTOGA9.192e-3836.57Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_ORNAN9.192e-3836.11Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_ATEAB1.201e-3736.57Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_PONAB1.568e-3736.11Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_HUMAN1.568e-3736.11Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_GORGO1.568e-3736.11Cystic fibrosis transmembrane conductance regulato... [more]
ABC1_SCHPO1.568e-3739.73ATP-binding cassette transporter abc1 OS=Schizosac... [more]
CFTR_SHEEP2.675e-3736.57Cystic fibrosis transmembrane conductance regulato... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-009-G04-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756536 ID=EY756536; Name=EY756536; organism=Citrus sinensis; type=EST; length=888bp
CCACGCGTCCGAGACTTGCAGGTCAGATATCGCTCCAACACTCCTCTGGT
TCTCAAAGGTATTACACTCAGCATTCACGGGGGAGAGAAGATTGGTGTAG
TTGGGCGTACAGGAAGTGGGAAGTCAACTTTAATTCAAGTTTTCTTTAGG
CTGGTGGAGCCTTCAGGAGGGAGAATCATTATTGATGGAATCGACATTTC
ATTGTTGGGGCTTCATGACCTAAGGTCTCGCTTTGGGATCATTCCTCAAG
AACCTGTCCTTTTTGAAGGAACTGTGAGAAGCAACATTGATCCAATTGGT
CAGTATTCAGATGAAGAAATCTGGAAGAGCCTCGAGCGATGTCAACTTAA
AGATGTGGTAGCTGCAAAGCCTGATAAACTCGATTCTTTAGTGGCCGATA
GTGGTGACAACTGGAGCGTGGGACAAAGGCAGCTTCTTTGTCTGGGAAGG
GTTATGCTAAAGCACAGCCGGCTCTTGTTTATGGATGAGGCGACGGCTTC
TGTTGATTCACAAACTGATGCTGAAATTCAAAGGATCATTCGAGAGGAGT
TTGCTGCCTGTACAATTATCAGCATTGCTCACAGGATACCCACAGTCATG
GATTGTGATAGAGTTATAGTTGTTGATGCAGGATGGGCGAAAGAATTTGG
CAGCCATCCAGGTTGCTTGAGAGCCATCACTCTTTGGAGCATTGGTGCAG
GAGTATGCCAACCGATCGGCAGAACTGTAGGAACAATCCTTTGCACTTGA
TGNTGGGTGAAAAGAGTTTTCTGTGATGGAATGCCTATGAGTTTAGGACC
ACCTGTGACTGGCATGAAAGATCACATTCCTCGCTCAAAGGTGCAGCAAA
GAACTTCTTCTGATATGCATGGAATTTAGTAATACTCT
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