EY756536

Overview
NameEY756536
Unique NameEY756536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11050 contig Csv1_Contig11050:689..1578. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: CFTR_RAT (Cystic fibrosis transmembrane conductance regulator OS=Rattus norvegicus GN=Cftr PE=1 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 2.675e-37
Identity = 77/209 (36.84%), Postives = 125/209 (59.81%), Query Frame = 1 
Query:    7 VRDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 633
            V+DL V+Y  +   +L+ I+ SI  G+++G++GRTGSGKSTL+  F R++                      R  FG+I Q+  +F GT R N+DP G++ DEEIWK  ++  LK V+   P +L+  + D G   S G +QL+CL R +L  ++++ +DE +A++D  T   I+R++R+ FA CT++   HRI  ++DC R +V++ G
Sbjct: 1208 VKDLTVKYVDDGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRMLNIKGEIQIDGVSWNSMTLQEW-RKAFGVITQKVFIFSGTFRQNLDPNGKWRDEEIWKVADQVGLKSVIEQFPGQLNFTLVDGGYVLSHGHKQLMCLARSVLSKAKIILLDEPSANLDPITYQVIRRVLRQAFAGCTVVLCEHRIEAMLDCQRFLVIEQG 1415
[Close]
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: CFTR_PAPAN (Cystic fibrosis transmembrane conductance regulator OS=Papio anubis GN=CFTR PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.675e-37
Identity = 78/216 (36.11%), Postives = 126/216 (58.33%), Query Frame = 1 
Query:    7 VRDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGS 654
            V+DL  +Y      +L+ I+ SI  G+++G++GRTGSGKSTL+  F RL+  +                   R  FG+IPQ+  +F GT R N+DP  Q+SD+EIWK  +   L+ V+   P KLD ++ D G   S G +QL+CL R +L  +++L +DE +A +D  T   I+R +++ FA CT+I   HRI  +++C + +V++    +++ S
Sbjct: 1213 VKDLTAKYTEGGNPILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1427
[Close]
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: CFTR_MACNE (Cystic fibrosis transmembrane conductance regulator OS=Macaca nemestrina GN=CFTR PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.675e-37
Identity = 78/216 (36.11%), Postives = 126/216 (58.33%), Query Frame = 1 
Query:    7 VRDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGS 654
            V+DL  +Y      +L+ I+ SI  G+++G++GRTGSGKSTL+  F RL+  +                   R  FG+IPQ+  +F GT R N+DP  Q+SD+EIWK  +   L+ V+   P KLD ++ D G   S G +QL+CL R +L  +++L +DE +A +D  T   I+R +++ FA CT+I   HRI  +++C + +V++    +++ S
Sbjct: 1213 VKDLTAKYTEGGNPILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1427
[Close]
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: CFTR_MACMU (Cystic fibrosis transmembrane conductance regulator OS=Macaca mulatta GN=CFTR PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 2.675e-37
Identity = 78/216 (36.11%), Postives = 126/216 (58.33%), Query Frame = 1 
Query:    7 VRDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGS 654
            V+DL  +Y      +L+ I+ SI  G+++G++GRTGSGKSTL+  F RL+  +                   R  FG+IPQ+  +F GT R N+DP  Q+SD+EIWK  +   L+ V+   P KLD ++ D G   S G +QL+CL R +L  +++L +DE +A +D  T   I+R +++ FA CT+I   HRI  +++C + +V++    +++ S
Sbjct: 1213 VKDLTAKYTEGGNPILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1427
[Close]
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: CFTR_MACFU (Cystic fibrosis transmembrane conductance regulator OS=Macaca fuscata fuscata GN=CFTR PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.675e-37
Identity = 78/216 (36.11%), Postives = 126/216 (58.33%), Query Frame = 1 
Query:    7 VRDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGS 654
            V+DL  +Y      +L+ I+ SI  G+++G++GRTGSGKSTL+  F RL+  +                   R  FG+IPQ+  +F GT R N+DP  Q+SD+EIWK  +   L+ V+   P KLD ++ D G   S G +QL+CL R +L  +++L +DE +A +D  T   I+R +++ FA CT+I   HRI  +++C + +V++    +++ S
Sbjct: 1213 VKDLTAKYTEGGNPILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1427
[Close]
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: CFTR_MACFA (Cystic fibrosis transmembrane conductance regulator OS=Macaca fascicularis GN=CFTR PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.675e-37
Identity = 78/216 (36.11%), Postives = 126/216 (58.33%), Query Frame = 1 
Query:    7 VRDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGS 654
            V+DL  +Y      +L+ I+ SI  G+++G++GRTGSGKSTL+  F RL+  +                   R  FG+IPQ+  +F GT R N+DP  Q+SD+EIWK  +   L+ V+   P KLD ++ D G   S G +QL+CL R +L  +++L +DE +A +D  T   I+R +++ FA CT+I   HRI  +++C + +V++    +++ S
Sbjct: 1213 VKDLTAKYTEGGNPILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1427
[Close]
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: CFTR_COLGU (Cystic fibrosis transmembrane conductance regulator OS=Colobus guereza GN=CFTR PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.493e-37
Identity = 77/216 (35.65%), Postives = 126/216 (58.33%), Query Frame = 1 
Query:    7 VRDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGS 654
            ++DL  +Y      +L+ I+ SI  G+++G++GRTGSGKSTL+  F RL+  +                   R  FG+IPQ+  +F GT R N+DP  Q+SD+EIWK  +   L+ V+   P KLD ++ D G   S G +QL+CL R +L  +++L +DE +A +D  T   I+R +++ FA CT+I   HRI  +++C + +V++    +++ S
Sbjct: 1213 IKDLTAKYTEGGNPILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TKGEIQIDGVSWDSVTLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1427
[Close]
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: CFTR_SAIBB (Cystic fibrosis transmembrane conductance regulator OS=Saimiri boliviensis boliviensis GN=CFTR PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.562e-37
Identity = 77/216 (35.65%), Postives = 126/216 (58.33%), Query Frame = 1 
Query:    7 VRDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGS 654
            ++DL  +Y      +L+ I+ SI  G+++G++GRTGSGKSTL+  F RL+  +                   R  FG+IPQ+  +F GT R N+DP  Q+SD+EIWK  +   L+ V+   P KLD ++ D G   S G +QL+CL R +L  +++L +DE +A +D  T   I+R +++ FA CT+I   HRI  +++C + +V++    +++ S
Sbjct: 1213 IKDLTAKYVEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFTGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRALKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1427
[Close]
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: CFTR_ATEGE (Cystic fibrosis transmembrane conductance regulator OS=Ateles geoffroyi GN=CFTR PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.562e-37
Identity = 77/216 (35.65%), Postives = 126/216 (58.33%), Query Frame = 1 
Query:    7 VRDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGS 654
            ++DL  +Y      +L+ I+ SI  G+++G++GRTGSGKSTL+  F RL+  +                   R  FG+IPQ+  +F GT R N+DP  Q+SD+EIWK  +   L+ V+   P KLD ++ D G   S G +QL+CL R +L  +++L +DE +A +D  T   I+R +++ FA CT+I   HRI  +++C + +V++    +++ S
Sbjct: 1212 IKDLTAKYIEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFTGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRALKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1426
[Close]
BLAST of EY756536 vs. ExPASy Swiss-Prot
Match: CFTR_AOTNA (Cystic fibrosis transmembrane conductance regulator OS=Aotus nancymaae GN=CFTR PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.562e-37
Identity = 77/216 (35.65%), Postives = 126/216 (58.33%), Query Frame = 1 
Query:    7 VRDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGS 654
            ++DL  +Y      +L+ I+ SI  G+++G++GRTGSGKSTL+  F RL+  +                   R  FG+IPQ+  +F GT R N+DP  Q+SD+EIWK  +   L+ V+   P KLD ++ D G   S G +QL+CL R +L  +++L +DE +A +D  T   I+R +++ FA CT+I   HRI  +++C + +V++    +++ S
Sbjct: 1213 IKDLTAKYIEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFTGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRALKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1427
The following BLAST results are available for this feature:
BLAST of EY756536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CFTR_RAT2.675e-3736.84Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_PAPAN2.675e-3736.11Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_MACNE2.675e-3736.11Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_MACMU2.675e-3736.11Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_MACFU2.675e-3736.11Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_MACFA2.675e-3736.11Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_COLGU3.493e-3735.65Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_SAIBB4.562e-3735.65Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_ATEGE4.562e-3735.65Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_AOTNA4.562e-3735.65Cystic fibrosis transmembrane conductance regulato... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-009-G04-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756536 ID=EY756536; Name=EY756536; organism=Citrus sinensis; type=EST; length=888bp
CCACGCGTCCGAGACTTGCAGGTCAGATATCGCTCCAACACTCCTCTGGT
TCTCAAAGGTATTACACTCAGCATTCACGGGGGAGAGAAGATTGGTGTAG
TTGGGCGTACAGGAAGTGGGAAGTCAACTTTAATTCAAGTTTTCTTTAGG
CTGGTGGAGCCTTCAGGAGGGAGAATCATTATTGATGGAATCGACATTTC
ATTGTTGGGGCTTCATGACCTAAGGTCTCGCTTTGGGATCATTCCTCAAG
AACCTGTCCTTTTTGAAGGAACTGTGAGAAGCAACATTGATCCAATTGGT
CAGTATTCAGATGAAGAAATCTGGAAGAGCCTCGAGCGATGTCAACTTAA
AGATGTGGTAGCTGCAAAGCCTGATAAACTCGATTCTTTAGTGGCCGATA
GTGGTGACAACTGGAGCGTGGGACAAAGGCAGCTTCTTTGTCTGGGAAGG
GTTATGCTAAAGCACAGCCGGCTCTTGTTTATGGATGAGGCGACGGCTTC
TGTTGATTCACAAACTGATGCTGAAATTCAAAGGATCATTCGAGAGGAGT
TTGCTGCCTGTACAATTATCAGCATTGCTCACAGGATACCCACAGTCATG
GATTGTGATAGAGTTATAGTTGTTGATGCAGGATGGGCGAAAGAATTTGG
CAGCCATCCAGGTTGCTTGAGAGCCATCACTCTTTGGAGCATTGGTGCAG
GAGTATGCCAACCGATCGGCAGAACTGTAGGAACAATCCTTTGCACTTGA
TGNTGGGTGAAAAGAGTTTTCTGTGATGGAATGCCTATGAGTTTAGGACC
ACCTGTGACTGGCATGAAAGATCACATTCCTCGCTCAAAGGTGCAGCAAA
GAACTTCTTCTGATATGCATGGAATTTAGTAATACTCT
back to top