EY756516

Overview
NameEY756516
Unique NameEY756516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13333 contig Csv1_Contig13333:1..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY756516 vs. ExPASy Swiss-Prot
Match: TM167_DICDI (Transmembrane protein 167 homolog OS=Dictyostelium discoideum GN=tmem167 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 39/71 (54.93%), Postives = 48/71 (67.61%), Query Frame = 2 
Query:  230 MSALFNFHSFLTVVLLGICTCTYIKMQFPAILEHRT--GFRGFFWKAARIGERLSPWVAVGCFSMGLSIIF 436
            M A+FNF S L V+LL ICTCTYI+  +P++LE R    F G   KAA IGERLSPWV+  C  MGL  ++
Sbjct:    1 MVAIFNFQSLLVVILLFICTCTYIRGSYPSLLEVRDKHSFSGLPRKAAIIGERLSPWVSACCLIMGLWTLY 71
[Close]
BLAST of EY756516 vs. ExPASy Swiss-Prot
Match: TM167_YEAST (Transmembrane protein 167 homolog OS=Saccharomyces cerevisiae GN=YNL024C-A PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.085e-12
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 2 
Query:  230 MSALFNFHSFLTVVLLGICTCTYIKMQFPAILEHRTGFR--GFFWKAARIGERLSPWVAVGCFSMGLS 427
            MSALFNF S L V+LL IC+C+Y+  Q+P++L+        G FWK AR+GER SP+V++ C  M +S
Sbjct:    1 MSALFNFRSLLQVILLLICSCSYVHGQWPSLLDRYKNHEVLGAFWKMARVGERASPYVSLACILMAIS 68
The following BLAST results are available for this feature:
BLAST of EY756516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
TM167_DICDI3.217e-1354.93Transmembrane protein 167 homolog OS=Dictyostelium... [more]
TM167_YEAST2.085e-1250.00Transmembrane protein 167 homolog OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-009-E05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756516 ID=EY756516; Name=EY756516; organism=Citrus sinensis; type=EST; length=719bp
CCACGCGTCCGCGAAAAAGAAATATTAATCTCGCCGTTGGACATTCGGAG
AGCACTTTGGAATTCGTTATCATTCATTCTAAAACTCTACGGTATCCCAA
ATCTCGTCTTTGCTTCACTGTAGCTTCGATTGAGATGATTATAATTTTTT
TTTGGTTAAATATTCGTCAGTAATGTCTGTCATTTTATAGATCTGAAGGA
GAAGTAATCAAATTAAGGAGATCGCAGGCATGTCGGCACTCTTCAATTTC
CATTCCTTTCTGACGGTTGTCCTGTTGGGGATTTGTACGTGCACTTATAT
AAAGATGCAATTTCCAGCAATTCTTGAACATAGAACTGGGTTTCGTGGTT
TCTTCTGGAAAGCAGCTAGGATTGGTGAGCGTTTGAGCCCCTGGGTTGCT
GTTGGATGCTTTTCAATGGGGCTTTCAATAATCTTTTTCTAACAAAGAAA
CATCTTGTCTATTTAGAAGTAAGGTCCTTCTTCTTACCATTTCTGGTATT
TTATGTATATGTCAGCAAATGTGTACTTCCTTGAAATTCAATATTATTGA
ATCGTTTGTCTGATATACGAGTATTTGTCAGACACTATTTTGTGACTCAT
TTCTTGTTTTCTAGCCATAGTAGCATTCTTTAGAAACTTTGNTTACTGAT
GTGCAAAGTGTGTGCAAAGAGCCATCTGTTTTAGAATGTCTATACTATGA
GAAATGGTNCTTGGAGGTT
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