EY756503

Overview
NameEY756503
Unique NameEY756503
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2673 contig Csv1_Contig2673:531..1330. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756503 vs. ExPASy Swiss-Prot
Match: TNNC2_PIG (Troponin C, skeletal muscle OS=Sus scrofa GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 7.693e-38
Identity = 76/155 (49.03%), Postives = 111/155 (71.61%), Query Frame = 3
Query:   69 TNGRRKMADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 524
            T+ + +    L+++ I+EFK AF +FD DG G I+ KELGTVMR LGQ PT+ EL  +I EVD DG+GTIDF EFL +M R+MK+     SEEEL E FR+FD++ +G+I A EL  +    GE +TDEE++ ++++ D + DG+I+++EF+K+M
Sbjct:    1 TDQQAEARSYLSEEMIAEFKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNMDGYIDAEELAEIFRASGEHVTDEEIESIMKDGDKNNDGRIDFDEFLKMM 155          
BLAST of EY756503 vs. ExPASy Swiss-Prot
Match: TNNC2_ANGAN (Troponin C, skeletal muscle OS=Anguilla anguilla PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.312e-37
Identity = 76/145 (52.41%), Postives = 108/145 (74.48%), Query Frame = 3
Query:   99 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 524
            L+++ I+EFK AF +FD DG G I+TKELGTVMR LGQNPT  EL  +I EVD DG+GTIDF EFL +M R++K+     SEEEL E FRVFDK+ +GFI   E   ++ + GE +++EE+DE++ + D + DG+I+++E++K+M
Sbjct:   12 LSEEMIAEFKAAFDMFDTDGGGDISTKELGTVMRMLGQNPTREELDAIIEEVDEDGSGTIDFEEFLVMMVRQLKEDQAGKSEEELAEFFRVFDKNGDGFIDREEFGEILRSSGEPVSEEEIDELMADGDKNNDGKIDFDEWLKMM 156          
BLAST of EY756503 vs. ExPASy Swiss-Prot
Match: CATR_SCHDU (Caltractin OS=Scherffelia dubia PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.312e-37
Identity = 76/142 (53.52%), Postives = 99/142 (69.72%), Query Frame = 3
Query:   99 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 524
            LT++Q  E +EAF LFD DG G I  KEL   MR+LG  P + E++ MI ++D DG+GTIDF EFL +M  KM + DS EE+ +AFR+FD D+ G IS   L+ V   LGE +TDEE+ EMI EAD DGDG++N EEF ++M
Sbjct:   21 LTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGTIDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDETGKISFKNLKRVAKELGENMTDEELQEMIDEADRDGDGEVNEEEFFRIM 162          
BLAST of EY756503 vs. ExPASy Swiss-Prot
Match: CETN1_HUMAN (Centrin-1 OS=Homo sapiens GN=CETN1 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.714e-37
Identity = 79/154 (51.30%), Postives = 107/154 (69.48%), Query Frame = 3
Query:   69 TNGRRKMAD--QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 524
            T  +RK+A   +LT+DQ  E +EAF LFD DG G I  KEL   MR+LG  P + E++ MI+EVD +G G I F +FL +M +KM + D++EE+ +AFR+FD D+ G IS   L+ V   LGE LTDEE+ EMI EAD DGDG++N EEF+++M
Sbjct:   13 TGQKRKVAPKPELTEDQKQEVREAFDLFDVDGSGTIDAKELKVAMRALGFEPRKEEMKKMISEVDREGTGKISFNDFLAVMTQKMSEKDTKEEILKAFRLFDDDETGKISFKNLKRVANELGENLTDEELQEMIDEADRDGDGEVNEEEFLRIM 166          
BLAST of EY756503 vs. ExPASy Swiss-Prot
Match: TNNC2_MOUSE (Troponin C, skeletal muscle OS=Mus musculus GN=Tnnc2 PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 2.238e-37
Identity = 75/155 (48.39%), Postives = 111/155 (71.61%), Query Frame = 3
Query:   69 TNGRRKMADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 524
            T+ + +    L+++ I+EFK AF +FD DG G I+ KELGTVMR LGQ PT+ EL  +I EVD DG+GTIDF EFL +M R+MK+     SEEEL E FR+FD++ +G+I A EL  +    GE +T+EE++ ++++ D + DG+I+++EF+K+M
Sbjct:    2 TDQQAEARSYLSEEMIAEFKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNADGYIDAEELAEIFRASGEHVTEEEIESLMKDGDKNNDGRIDFDEFLKMM 156          
BLAST of EY756503 vs. ExPASy Swiss-Prot
Match: TNNC1_PIG (Troponin C, slow skeletal and cardiac muscles OS=Sus scrofa GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.238e-37
Identity = 76/148 (51.35%), Postives = 111/148 (75.00%), Query Frame = 3
Query:   93 DQLTDDQISEFKEAFSLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 524
            +QLT++Q +EFK AF +F     DGCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   10 EQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of EY756503 vs. ExPASy Swiss-Prot
Match: TNNC1_MOUSE (Troponin C, slow skeletal and cardiac muscles OS=Mus musculus GN=Tnnc1 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.238e-37
Identity = 76/148 (51.35%), Postives = 111/148 (75.00%), Query Frame = 3
Query:   93 DQLTDDQISEFKEAFSLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 524
            +QLT++Q +EFK AF +F     DGCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   10 EQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKMMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of EY756503 vs. ExPASy Swiss-Prot
Match: TNNC1_BOVIN (Troponin C, slow skeletal and cardiac muscles OS=Bos taurus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.238e-37
Identity = 76/148 (51.35%), Postives = 111/148 (75.00%), Query Frame = 3
Query:   93 DQLTDDQISEFKEAFSLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 524
            +QLT++Q +EFK AF +F     DGCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   10 EQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of EY756503 vs. ExPASy Swiss-Prot
Match: TNNC2_HUMAN (Troponin C, skeletal muscle OS=Homo sapiens GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.923e-37
Identity = 75/155 (48.39%), Postives = 110/155 (70.97%), Query Frame = 3
Query:   69 TNGRRKMADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 524
            T+ + +    L+++ I+EFK AF +FD DG G I+ KELGTVMR LGQ PT+ EL  +I EVD DG+GTIDF EFL +M R+MK+     SEEEL E FR+FD++ +G+I   EL  +    GE +TDEE++ ++++ D + DG+I+++EF+K+M
Sbjct:    2 TDQQAEARSYLSEEMIAEFKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNADGYIDPEELAEIFRASGEHVTDEEIESLMKDGDKNNDGRIDFDEFLKMM 156          
BLAST of EY756503 vs. ExPASy Swiss-Prot
Match: TNNC1_RABIT (Troponin C, slow skeletal and cardiac muscles OS=Oryctolagus cuniculus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.923e-37
Identity = 76/148 (51.35%), Postives = 111/148 (75.00%), Query Frame = 3
Query:   93 DQLTDDQISEFKEAFSLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 524
            +QLT++Q +EFK AF +F     DGCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   10 EQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
The following BLAST results are available for this feature:
BLAST of EY756503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 479
Match NameE-valueIdentityDescription
TNNC2_PIG7.693e-3849.03Troponin C, skeletal muscle OS=Sus scrofa GN=TNNC2... [more]
TNNC2_ANGAN1.312e-3752.41Troponin C, skeletal muscle OS=Anguilla anguilla P... [more]
CATR_SCHDU1.312e-3753.52Caltractin OS=Scherffelia dubia PE=2 SV=1[more]
CETN1_HUMAN1.714e-3751.30Centrin-1 OS=Homo sapiens GN=CETN1 PE=2 SV=1[more]
TNNC2_MOUSE2.238e-3748.39Troponin C, skeletal muscle OS=Mus musculus GN=Tnn... [more]
TNNC1_PIG2.238e-3751.35Troponin C, slow skeletal and cardiac muscles OS=S... [more]
TNNC1_MOUSE2.238e-3751.35Troponin C, slow skeletal and cardiac muscles OS=M... [more]
TNNC1_BOVIN2.238e-3751.35Troponin C, slow skeletal and cardiac muscles OS=B... [more]
TNNC2_HUMAN2.923e-3748.39Troponin C, skeletal muscle OS=Homo sapiens GN=TNN... [more]
TNNC1_RABIT2.923e-3751.35Troponin C, slow skeletal and cardiac muscles OS=O... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-009-D03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756503 ID=EY756503; Name=EY756503; organism=Citrus sinensis; type=EST; length=798bp
CCACGCGTCCGAGCTCTTGGATTTTTGTAACGAAAAAAAAAATAAATACC
TATTTCTGAGTTGAAAAAACAAACGGAAGAAGAAAAATGGCGGATCAGCT
CACGGACGATCAGATCTCTGAGTTCAAAGAGGCCTTCAGCTTGTTTGACA
AGGATGGCGACGGTTGCATTACCACCAAGGAGCTTGGCACTGTTATGAGG
TCACTGGGTCAGAACCCCACTGAGGCTGAGCTCCAGGACATGATCAATGA
AGTGGATGCTGATGGCAATGGAACTATTGATTTTCCTGAATTCCTAAACC
TCATGGCCAGGAAGATGAAGGATACCGACTCTGAGGAGGAGCTGAAAGAG
GCCTTCCGGGTTTTCGACAAGGATCAGAATGGTTTCATCTCAGCTGCTGA
GCTGCGCCATGTGATGACAAACCTAGGAGAGAAACTTACTGATGAAGAAG
TTGATGAGATGATAAGGGAAGCTGATGTTGATGGTGATGGCCAGATAAAT
TATGAGGAATTTGTCAAGGTTATGATGGCCAAGTAATGACCCCAACCCAC
CAATACTTATAAAATGGGTTGACTAAATTATAAAGGGATTCCTAGTTTTC
TCTTTTACAATTTTTAATTTGATAGTCATGAGGGTCAGGCTAAAGGAAAG
CATGGTCTTTTAATGGTGATGGGCCTGATGGTGTAGGAAGAAATGTGTCT
CCCTCTCAATATGTCTTGTGACTCGAAAAACTTTTCGGNTTTTATTATTT
TTAGTGGTCTGCTGGTCTATGAAAAAAAAAAAAAAAAAAAAAAAAAAA
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