EY756474

Overview
NameEY756474
Unique NameEY756474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756474 vs. ExPASy Swiss-Prot
Match: SPAST_IXOSC (Spastin OS=Ixodes scapularis GN=spas PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.502e-30
Identity = 80/225 (35.56%), Postives = 129/225 (57.33%), Query Frame = 2
Query:    5 ASGDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIM--ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSR-PDKISAAEIAAICQEAGMHAVRK 670
            A  ++ KQ + E V LP    EL+  +   PP+G+LL+GPPG GKTMLAKAVA+ + + F+ +  +    KY+GEG ++VR +F +A+E  P+IIFIDEVD++ + R D +  A R   R+  E L + DG       +V++  ATNR   LD A LR  R  +++   LPD   + ++ +    K N     D   Y++R  +  S +++ A+ ++A +  +R+
Sbjct:  377 AGQEVAKQALSEMVILPTDRPELFTGLRA-PPKGLLLFGPPGNGKTMLAKAVAHESNSTFLNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLSERKDNEHEATR---RLKTEFLVEFDGLHTGSEERVLVMGATNRPQELDDAALR--RFTKRVYVTLPDHNTRVILLEKLLKKHNNPLSADKLKYLARLTEGYSGSDLTALAKDAALGPIRE 595          
BLAST of EY756474 vs. ExPASy Swiss-Prot
Match: KATL2_XENTR (Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis GN=katnal2 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.346e-30
Identity = 83/226 (36.73%), Postives = 132/226 (58.41%), Query Frame = 2
Query:   14 DIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVN-VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLE---DYV---SRPDKISAAEIAAICQEAGMHAVRK 670
            D  K+ ++EAV  P+ + +L+  I + P +G+LLYGPPGTGKT+LAKAVA      F  +  S  V K+ G+  ++VR +F LA+ +AP+ IF+DE++++ + R     G     +R+  ELL QMDG  ++ + V V+ A+N    LD A+LR  RL+++I   LP +  ++ + Q     ++ S  V+L    DY    +  D  S ++I  +C+EA M  VRK
Sbjct:  264 DAAKRLVKEAVVYPIRYPQLFTGI-LSPWKGLLLYGPPGTGKTLLAKAVATECNTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGTGPGGEHEGSRRMKTELLVQMDGLARSDDLVFVLAASNLPWELDYAMLR--RLEKRILVDLPSKEARQAMIQHWLPPVSNSSGVELRTDLDYSTLGAETDGYSGSDIRLVCKEAAMRPVRK 486          
BLAST of EY756474 vs. ExPASy Swiss-Prot
Match: VPS4_SCHPO (Suppressor protein of bem1/bed5 double mutants OS=Schizosaccharomyces pombe GN=vps4 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.707e-30
Identity = 80/219 (36.53%), Postives = 131/219 (59.82%), Query Frame = 2
Query:   23 KQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVN-VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKM--NLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRK 670
            K+ ++E V LP+   +L+   G  P  G+LLYGPPGTGK+ LAKAVA    + F  +  S+ V K++GE  R+VR +F +A+E  P+IIFIDE+D++  +R + ++ + R   RI  E L QM+G  +  + V V+ ATN   TLD A+ R  R +++I  PLP+   +  +F++   K+   L+ + D ++     D  S ++I+ + ++A M  VR+
Sbjct:  138 KEALKETVLLPIKLPQLFSH-GRKPWSGILLYGPPGTGKSYLAKAVATEAGSTFFSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFIDEIDSLCGSRSEGESESSR---RIKTEFLVQMNGVGKDESGVLVLGATNIPWTLDSAIRR--RFEKRIYIPLPNAHARARMFELNVGKIPSELTSQ-DFKELAKMTDGYSGSDISIVVRDAIMEPVRR 349          
BLAST of EY756474 vs. ExPASy Swiss-Prot
Match: YME1_SCHMA (Protein YME1 homolog OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.271e-29
Identity = 76/220 (34.55%), Postives = 118/220 (53.64%), Query Frame = 2
Query:   14 DIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN 673
            D  K+E+ + VE  L + E + QIG   P+GVLL GPPG GKT+LAKAV+      F+   GS F +  +G G   +R +F  AK+N+P ++FIDE+D++   R    +       + + +LL +MDGF     + V+ ATN+A+ LD ALLRPGR D +I    P    +  +  +   K+     +D+E         + A+I  +  +A + A  +N
Sbjct:  172 DEVKKELVDVVEF-LRNPEKFNQIGAKLPKGVLLVGPPGVGKTLLAKAVSGEAQVPFLYASGSSFDEVLVGLGASRIRQLFTTAKQNSPCLVFIDEIDSVGGNR--TFSPHHPFANQTINQLLAEMDGFQSKEGIIVLGATNQAEVLDKALLRPGRFDVQIHVSPPTYEGRIALLNLYLKKVKTGSNIDIEKLAHGTVGYTGADIQNLVNQAAIAAALRN 388          
BLAST of EY756474 vs. ExPASy Swiss-Prot
Match: TBP6_YEAST (Probable 26S protease subunit YTA6 OS=Saccharomyces cerevisiae GN=YTA6 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.661e-29
Identity = 83/228 (36.40%), Postives = 122/228 (53.51%), Query Frame = 2
Query:   23 KQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTV------------NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKM-NLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVR 667
            K  ++EAV  P    +L+K +  +P RG+LL+GPPGTGKTM+AKAVA  + + F  V  S  + KYLGE  ++VR +F +AK+ +P+IIFIDE+D++ TAR D +  + R   RI  ELL Q                     V V+ ATN    +D A  R  R  RK+  PLPD   +    +   AK  N   ++D E      +  S +++ ++ +EA M  +R
Sbjct:  480 KNSLKEAVVYPFLRPDLFKGLR-EPVRGMLLFGPPGTGKTMIAKAVATESNSTFFSVSASSLLSKYLGESEKLVRALFYMAKKLSPSIIFIDEIDSMLTARSDNENESSR---RIKTELLIQWSSLSSATAQSEDRNNTLDSRVLVLGATNLPWAIDDAARR--RFSRKLYIPLPDYETRLYHLKRLMAKQKNSLQDLDYELITEMTEGFSGSDLTSLAKEAAMEPIR 701          
BLAST of EY756474 vs. ExPASy Swiss-Prot
Match: SPAST_XENTR (Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.661e-29
Identity = 81/225 (36.00%), Postives = 128/225 (56.89%), Query Frame = 2
Query:    5 ASGDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIM--ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKM-NLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRK 670
            A  D+ KQ ++E V LP    EL+  +   P RG+LL+GPPG GKTMLAKAVA  + A F  +  +    KY+GEG ++VR +F +A+E  P+IIFIDEVD++   R + +  A R   R+  E L + DG     + +V++  ATNR   LD A+LR  R  +++   LP+   + L+ +   +K  N  +E +L       +  S ++I A+ ++A +  +R+
Sbjct:  332 AGQDLAKQALQEIVILPSIRPELFTGLRA-PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFSVARELQPSIIFIDEVDSLLCERREGEHDASR---RLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLR--RFTKRVYVSLPNEETRLLLLKNLLSKQGNPLNEKELTQLSRLTEGYSGSDITALAKDAALGPIRE 550          
BLAST of EY756474 vs. ExPASy Swiss-Prot
Match: KATL2_HUMAN (Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens GN=KATNAL2 PE=2 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 1.661e-29
Identity = 81/226 (35.84%), Postives = 128/226 (56.64%), Query Frame = 2
Query:   14 DIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVN-VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ------VCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRK 670
            D  KQ ++EAV  P+ + +L+  I + P +G+LLYGPPGTGKT+LAKAVA      F  +  S  V K+ G+  ++VR +F LA+ +AP+ IF+DE++++ + R  A  G      R+  ELL QMDG  ++ + V V+ A+N    LD A+LR  RL+++I   LP R  ++ +          +  + L  E++        +  S ++I  +C+EA M  VRK
Sbjct:  260 DAAKQLVKEAVVYPIRYPQLFTGI-LSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGTASGGEHEGSLRMKTELLVQMDGLARSEDLVFVLAASNLPWELDCAMLR--RLEKRILVDLPSREARQAMIYHWLPPVSKSRALELHTELEYSVLSQETEGYSGSDIKLVCREAAMRPVRK 482          
BLAST of EY756474 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 2.169e-29
Identity = 83/219 (37.90%), Postives = 129/219 (58.90%), Query Frame = 2
Query:   23 KQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT-AAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD-QTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQV-CTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRK 670
            K+ ++EAV LP+    L+      P RG+LL+GPPGTGK+ LAKAVA     + F  +  S+ V K+LGE  ++V+++F+LA+EN P+IIFIDE+D++  +R + ++ A R   RI  E L QM G       + V+ ATN    LD A+ R  R +++I  PLP+   +  +F++   +  N   E D ++   + D  S A+I+ I ++A M  VRK
Sbjct:  143 KEALKEAVILPIKFPHLFTGKRT-PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAAR---RIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355          
BLAST of EY756474 vs. ExPASy Swiss-Prot
Match: FIGL1_RAT (Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.833e-29
Identity = 75/224 (33.48%), Postives = 128/224 (57.14%), Query Frame = 2
Query:    5 ASGDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTV--NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD-RRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVR 667
            A  +  K  I+E V  P+   +++  +   PP+G+LL+GPPGTGKT++ K +A+ + A F  +  S    K++GEG +MVR +F +A+   PA+IFIDE+D++ + R D +  + R   RI  E L Q+DG   +    + V+ ATNR   +D A  R  RL +++  PLP+   +K++V  + + +     + + E  V + D  S A++  +C+EA +  +R
Sbjct:  407 AGVEFAKATIKEIVVWPMMRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSR---RIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVVNLMSKEQCCLTDEETELVVQQSDGFSGADMTQLCREASLGPIR 624          
BLAST of EY756474 vs. ExPASy Swiss-Prot
Match: VPS4B_BOVIN (Vacuolar protein sorting-associated protein 4B OS=Bos taurus GN=VPS4B PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.699e-29
Identity = 83/219 (37.90%), Postives = 127/219 (57.99%), Query Frame = 2
Query:   23 KQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT-AAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD-QTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQV-CTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRK 670
            K+ ++EAV LP+    L+      P RG+LL+GPPGTGK+ LAKAVA     + F  +  S+ V K+LGE  ++V+++F+LA+EN P+IIFIDE+D++  +R + ++ A R   RI  E L QM G       + V+ ATN    LD A+ R  R +++I  PLP+   +  +F++      N   E D  D   + +  S A+I+ I ++A M  VRK
Sbjct:  143 KEALKEAVILPIKFPHLFTGKRT-PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAAR---RIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFKLHLGTTQNSLTEADFRDLGKKTEGYSGADISIIVRDALMQPVRK 355          
The following BLAST results are available for this feature:
BLAST of EY756474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 383
Match NameE-valueIdentityDescription
SPAST_IXOSC1.502e-3035.56Spastin OS=Ixodes scapularis GN=spas PE=3 SV=1[more]
KATL2_XENTR3.346e-3036.73Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
VPS4_SCHPO5.707e-3036.53Suppressor protein of bem1/bed5 double mutants OS=... [more]
YME1_SCHMA1.271e-2934.55Protein YME1 homolog OS=Schistosoma mansoni PE=2 S... [more]
TBP6_YEAST1.661e-2936.40Probable 26S protease subunit YTA6 OS=Saccharomyce... [more]
SPAST_XENTR1.661e-2936.00Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1[more]
KATL2_HUMAN1.661e-2935.84Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
VPS4B_MOUSE2.169e-2937.90Vacuolar protein sorting-associated protein 4B OS=... [more]
FIGL1_RAT2.833e-2933.48Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fi... [more]
VPS4B_BOVIN3.699e-2937.90Vacuolar protein sorting-associated protein 4B OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-009-A05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756474 ID=EY756474; Name=EY756474; organism=Citrus sinensis; type=EST; length=926bp
CCACGCGTCCGGTGATATTCAAAAGCAGGAAATTCGTGAGGCTGTGGAGT
TACCGCTGACTCACCATGAGCTATACAAGCAAATTGGTATAGATCCTCCA
CGTGGTGTTTTACTTTATGGTCCTCCTGGAACTGGTAAAACTATGCTTGC
AAAGGCTGTTGCCAATCATACAACTGCAGCATTCATTAGAGTTGTTGGCT
CTGAGTTTGTTCAGAAGTACCTGGGTGAGGGTCCACGAATGGTTCGGGAT
GTTTTTCGTCTTGCTAAAGAGAATGCCCCAGCTATTATTTTTATTGATGA
GGTAGATGCTATAGCTACAGCTAGGTTTGATGCTCAAACTGGAGCTGATA
GAGAAGTTCAACGAATCCTTATGGAACTCCTCAATCAGATGGACGGATTT
GATCAGACTGTAAATGTTAAGGTCATCATGGCAACAAATCGGGCTGACAC
ATTGGACCCTGCACTTCTCCGTCCTGGAAGGCTTGACCGAAAAATTGAAT
TTCCTTTGCCTGATAGACGACAAAAGAGGCTCGTTTTTCAGGTTTGCACG
GCAAAGATGAACTTAAGCGATGAGGTAGACTTGGAGGATTATGTTTCCCG
TCCAGATAAAATCAGTGCTGCTGAGATTGCAGCCATCTGCCAAGAGGCAG
GAATGCATGCTGTGCGCAAGAACAGGTATGTCATACTCCCCAANNGACTT
TGAAAGGGTTATCGGACCAATGTGAAGAAGCCCGACACCGACTTCGAATT
TTTACAGTGAAGAGGGCTAGAAGAAGTTATGAAGATCACTTTGATAATGG
TNGNCAAATGTCTCTCTCACTATGAAAATTGNTGCCCCATGTCATGCATC
GCCACACTTGGGATATGCTTTATAGACTCATTGGCATATAATCCAGCTTT
AGTAGAGTAGCGTAAAATCGAAATCT
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