EY756474

Overview
NameEY756474
Unique NameEY756474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756474 vs. ExPASy Swiss-Prot
Match: SPAST_DROME (Spastin OS=Drosophila melanogaster GN=spas PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 3.132e-28
Identity = 72/223 (32.29%), Postives = 121/223 (54.26%), Query Frame = 2
Query:    5 ASGDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRK 670
            A  D+ KQ ++E V LP    EL+  +   P +G+LL+GPPG GKT+LA+AVA   +A F+ +  +    KY+G+G ++VR +F +A+   P+IIFIDEVD++ + R  ++  A R ++   +   + + G      + V+ ATNR   LD A LR  R  +++   LPD + + L+      K     D   L       D  S +++ A+ ++A +  +R+
Sbjct:  486 AGQDVAKQALQEMVILPSVRPELFTGLRA-PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRE 705          
BLAST of EY756474 vs. ExPASy Swiss-Prot
Match: SPAST_DROER (Spastin OS=Drosophila erecta GN=spas PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.132e-28
Identity = 72/223 (32.29%), Postives = 121/223 (54.26%), Query Frame = 2
Query:    5 ASGDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRK 670
            A  D+ KQ ++E V LP    EL+  +   P +G+LL+GPPG GKT+LA+AVA   +A F+ +  +    KY+G+G ++VR +F +A+   P+IIFIDEVD++ + R  ++  A R ++   +   + + G      + V+ ATNR   LD A LR  R  +++   LPD + + L+      K     D   L       D  S +++ A+ ++A +  +R+
Sbjct:  486 AGQDVAKQALQEMVILPSVRPELFTGLRA-PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRE 705          
BLAST of EY756474 vs. ExPASy Swiss-Prot
Match: NSF_PONAB (Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.132e-28
Identity = 76/215 (35.35%), Postives = 119/215 (55.35%), Query Frame = 2
Query:   68 ELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVV-GSEFVQKYLGEGPRMVRDVF--------RLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMN----LSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN 673
            E+ +Q+G    +G+LLYGPPG GKT+LA+ +     A   +VV G E + KY+GE    +R +F        RL   +   II  DE+DAI   R  +  G+      ++ +LL+++DG +Q  N+ VI  TNR D +D ALLRPGRL+ K+E  LPD + +  +  + TA+M     LS +VD+++        S AE+  + + A   A+ ++
Sbjct:  243 EIVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR-GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAMETKNFSGAELEGLVRAAQSTAMNRH 456          
BLAST of EY756474 vs. ExPASy Swiss-Prot
Match: SPAST_BOVIN (Spastin OS=Bos taurus GN=SPAST PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.090e-28
Identity = 77/225 (34.22%), Postives = 125/225 (55.56%), Query Frame = 2
Query:    5 ASGDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIM--ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRK 670
            A  ++ KQ ++E V LP    EL+  +   P RG+LL+GPPG GKTMLAKAVA  + A F  +  +    KY+GEG ++VR +F +A+E  P+IIFIDEVD++   R + +  A R   R+  E L + DG     + +V++  ATNR   LD A+LR  R  +++   LP+   + L+ +    K      + +L       +  S +++ A+ ++A +  +R+
Sbjct:  343 AGQELAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASR---RLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFTKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTNGYSGSDLTALAKDAALGPIRE 561          
BLAST of EY756474 vs. ExPASy Swiss-Prot
Match: NSF_RAT (Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.090e-28
Identity = 76/215 (35.35%), Postives = 119/215 (55.35%), Query Frame = 2
Query:   68 ELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVV-GSEFVQKYLGEGPRMVRDVF--------RLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMN----LSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN 673
            E+ +Q+G    +G+LLYGPPG GKT+LA+ +     A   +VV G E + KY+GE    +R +F        RL   +   II  DE+DAI   R  +  G+      ++ +LL+++DG +Q  N+ VI  TNR D +D ALLRPGRL+ K+E  LPD + +  +  + TA+M     LS +VD+++        S AE+  + + A   A+ ++
Sbjct:  243 EIVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR-GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAMNRH 456          
BLAST of EY756474 vs. ExPASy Swiss-Prot
Match: NSF_MOUSE (Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 4.090e-28
Identity = 76/215 (35.35%), Postives = 119/215 (55.35%), Query Frame = 2
Query:   68 ELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVV-GSEFVQKYLGEGPRMVRDVF--------RLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMN----LSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN 673
            E+ +Q+G    +G+LLYGPPG GKT+LA+ +     A   +VV G E + KY+GE    +R +F        RL   +   II  DE+DAI   R  +  G+      ++ +LL+++DG +Q  N+ VI  TNR D +D ALLRPGRL+ K+E  LPD + +  +  + TA+M     LS +VD+++        S AE+  + + A   A+ ++
Sbjct:  243 EIVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR-GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAMNRH 456          
BLAST of EY756474 vs. ExPASy Swiss-Prot
Match: NSF_HUMAN (Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 4.090e-28
Identity = 76/215 (35.35%), Postives = 119/215 (55.35%), Query Frame = 2
Query:   68 ELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVV-GSEFVQKYLGEGPRMVRDVF--------RLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMN----LSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN 673
            E+ +Q+G    +G+LLYGPPG GKT+LA+ +     A   +VV G E + KY+GE    +R +F        RL   +   II  DE+DAI   R  +  G+      ++ +LL+++DG +Q  N+ VI  TNR D +D ALLRPGRL+ K+E  LPD + +  +  + TA+M     LS +VD+++        S AE+  + + A   A+ ++
Sbjct:  243 EIVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR-GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAMNRH 456          
BLAST of EY756474 vs. ExPASy Swiss-Prot
Match: NSF_CRIGR (Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.090e-28
Identity = 76/215 (35.35%), Postives = 119/215 (55.35%), Query Frame = 2
Query:   68 ELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVV-GSEFVQKYLGEGPRMVRDVF--------RLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMN----LSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN 673
            E+ +Q+G    +G+LLYGPPG GKT+LA+ +     A   +VV G E + KY+GE    +R +F        RL   +   II  DE+DAI   R  +  G+      ++ +LL+++DG +Q  N+ VI  TNR D +D ALLRPGRL+ K+E  LPD + +  +  + TA+M     LS +VD+++        S AE+  + + A   A+ ++
Sbjct:  243 EIVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR-GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAMNRH 456          
BLAST of EY756474 vs. ExPASy Swiss-Prot
Match: FIGL1_CAEBR (Fidgetin-like protein 1 OS=Caenorhabditis briggsae GN=figl-1 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.090e-28
Identity = 74/218 (33.94%), Postives = 124/218 (56.88%), Query Frame = 2
Query:   23 KQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIM--ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRK 670
            K+ ++E V LP    +++  +   PP+GVLL+GPPGTGKTM+ + VA+   A F  +  S    K++GEG ++VR +F +A+   P++IFIDE+D++ +AR +++  + R   RI  E L Q+DG +   + ++++  ATNR   LD A  R  +    I  P PD R + +   +   +  ++D  +LE      D  S A++  +C EA M  +R+
Sbjct:  325 KKALKEIVVLPFQRPDIFTGLRA-PPKGVLLFGPPGTGKTMIGRCVASQAQATFFNISASSLTSKWVGEGEKLVRALFSVARLKLPSVIFIDEIDSLLSARSESEHESSR---RIKTEFLVQLDGVNTAPDERLLVLGATNRPQELDEAARRRFQKRLYIALPEPDSRTQIVENLLRGTRHEITDH-NLEKIRRLTDGYSGADMRQLCTEAAMGPIRE 537          
BLAST of EY756474 vs. ExPASy Swiss-Prot
Match: SPAST_DROPS (Spastin OS=Drosophila pseudoobscura pseudoobscura GN=spas PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.342e-28
Identity = 71/223 (31.84%), Postives = 123/223 (55.16%), Query Frame = 2
Query:    5 ASGDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSR-PDKISAAEIAAICQEAGMHAVRK 670
            A  ++ KQ ++E V LP    EL+  +   P +G+LL+GPPG GKT+LA+AVA   +A F+ +  +    KY+G+G ++VR +F +A+   P+IIFIDEVD++ + R   +  A R ++   +   + + G      + V+ ATNR   LD A LR  R  +++   LPD + + L+      K     + D    +S+  D  S +++ A+ ++A +  +R+
Sbjct:  516 AGQEVAKQALQEMVILPSVRPELFTGLRA-PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHLQPSIIFIDEVDSLLSERSSGEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTDALRRLSKITDGYSGSDLTALAKDAALEPIRE 735          
The following BLAST results are available for this feature:
BLAST of EY756474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 383
Match NameE-valueIdentityDescription
SPAST_DROME3.132e-2832.29Spastin OS=Drosophila melanogaster GN=spas PE=1 SV... [more]
SPAST_DROER3.132e-2832.29Spastin OS=Drosophila erecta GN=spas PE=3 SV=1[more]
NSF_PONAB3.132e-2835.35Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 ... [more]
SPAST_BOVIN4.090e-2834.22Spastin OS=Bos taurus GN=SPAST PE=2 SV=1[more]
NSF_RAT4.090e-2835.35Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf ... [more]
NSF_MOUSE4.090e-2835.35Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 ... [more]
NSF_HUMAN4.090e-2835.35Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 ... [more]
NSF_CRIGR4.090e-2835.35Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF... [more]
FIGL1_CAEBR4.090e-2833.94Fidgetin-like protein 1 OS=Caenorhabditis briggsae... [more]
SPAST_DROPS5.342e-2831.84Spastin OS=Drosophila pseudoobscura pseudoobscura ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-009-A05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756474 ID=EY756474; Name=EY756474; organism=Citrus sinensis; type=EST; length=926bp
CCACGCGTCCGGTGATATTCAAAAGCAGGAAATTCGTGAGGCTGTGGAGT
TACCGCTGACTCACCATGAGCTATACAAGCAAATTGGTATAGATCCTCCA
CGTGGTGTTTTACTTTATGGTCCTCCTGGAACTGGTAAAACTATGCTTGC
AAAGGCTGTTGCCAATCATACAACTGCAGCATTCATTAGAGTTGTTGGCT
CTGAGTTTGTTCAGAAGTACCTGGGTGAGGGTCCACGAATGGTTCGGGAT
GTTTTTCGTCTTGCTAAAGAGAATGCCCCAGCTATTATTTTTATTGATGA
GGTAGATGCTATAGCTACAGCTAGGTTTGATGCTCAAACTGGAGCTGATA
GAGAAGTTCAACGAATCCTTATGGAACTCCTCAATCAGATGGACGGATTT
GATCAGACTGTAAATGTTAAGGTCATCATGGCAACAAATCGGGCTGACAC
ATTGGACCCTGCACTTCTCCGTCCTGGAAGGCTTGACCGAAAAATTGAAT
TTCCTTTGCCTGATAGACGACAAAAGAGGCTCGTTTTTCAGGTTTGCACG
GCAAAGATGAACTTAAGCGATGAGGTAGACTTGGAGGATTATGTTTCCCG
TCCAGATAAAATCAGTGCTGCTGAGATTGCAGCCATCTGCCAAGAGGCAG
GAATGCATGCTGTGCGCAAGAACAGGTATGTCATACTCCCCAANNGACTT
TGAAAGGGTTATCGGACCAATGTGAAGAAGCCCGACACCGACTTCGAATT
TTTACAGTGAAGAGGGCTAGAAGAAGTTATGAAGATCACTTTGATAATGG
TNGNCAAATGTCTCTCTCACTATGAAAATTGNTGCCCCATGTCATGCATC
GCCACACTTGGGATATGCTTTATAGACTCATTGGCATATAATCCAGCTTT
AGTAGAGTAGCGTAAAATCGAAATCT
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