EY756474

Overview
NameEY756474
Unique NameEY756474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756474 vs. ExPASy Swiss-Prot
Match: YJOB_BACSU (Uncharacterized ATPase yjoB OS=Bacillus subtilis GN=yjoB PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.845e-12
Identity = 49/167 (29.34%), Postives = 78/167 (46.71%), Query Frame = 2
Query:   17 IQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL-RPGRLDRKIEFPLPD 514
            ++K+  R   +   +    Y+   I   RG+LLYGPPG GKT L K++A    A       +EF           + +VF+ A+  APA++ I+++D++               + +    LN +DG      + +I  TN  + +DP L+ R GR DR  E  LPD
Sbjct:  193 LKKEIYRSIDQFFHSDKSFYQTYDIPYKRGILLYGPPGNGKTTLVKSIAGSIDAPVAYWQITEFTSS------ETIEEVFQAARRLAPAVLVIEDIDSMP--------------EDVRSFFLNTLDGATSKEGLFLIGTTNYPEEIDPGLMNRAGRFDRAYEIGLPD 339          
BLAST of EY756474 vs. ExPASy Swiss-Prot
Match: YCF46_ODOSI (Uncharacterized AAA domain-containing protein ycf46 OS=Odontella sinensis GN=ycf46 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.039e-11
Identity = 53/199 (26.63%), Postives = 93/199 (46.73%), Query Frame = 2
Query:   86 GIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKM--NLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNR 676
            G+  PRG+LL G  GTGK++ AKA+A       +++         +GE    +R +  +A+  +P I++IDE+D  A +  D++ G      R+L   ++ +   ++T  V V+   N  D L   ++R GR D      LP+  +++ +F++   +   N     D +      +  S AEI     EA   A  + R
Sbjct:  255 GLPTPRGLLLIGIQGTGKSLTAKAIATEWQLPLLKLDVGRLFGGIVGESESRLRQMIDVAETLSPCILWIDEMDK-AFSNNDSR-GDSGTSNRVLATFISWLS--EKTKPVFVVATANNVDLLPLEIIRKGRFDEIFFLDLPELEERKEIFKIHIQEFRPNSWKLFDYKKLAQLSESFSGAEIRQSIIEAMYQAFDQQR 449          
BLAST of EY756474 vs. ExPASy Swiss-Prot
Match: Y4KL_RHISN (Uncharacterized AAA family ATPase y4kL OS=Rhizobium sp. (strain NGR234) GN=NGR_a02840 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.479e-11
Identity = 58/192 (30.21%), Postives = 89/192 (46.35%), Query Frame = 2
Query:   77 KQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKM-NLSDEVDLEDYVSRPDKISAAEIAAICQEA 649
            +Q G+     +L  GPPG GKT+ A+  A        RV     +  YLGE    +R  F  A++  P ++F DE DA+A  R D  +G   E++R++  LL  +D         +I ATN   +LD A+ R  R D  + F   DR +  ++ +    K  N+    D     +  +  S AEI  +C +A
Sbjct:  111 RQHGLKVRSKMLFCGPPGCGKTLCAEIFAAELGLPLFRVKLDRLISSYLGETATNIRKTFEFARKQ-PCVLFFDEFDALARTRDD--SGEHNELRRVVNSLLLFIDNMQP--KGFLIAATNLDRSLDAAIWR--RFDEVLWF---DRPEAAMIGRFLKLKFKNVPVAFDPARNSAALEGYSFAEIERVCTQA 292          
The following BLAST results are available for this feature:
BLAST of EY756474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 383
Match NameE-valueIdentityDescription
YJOB_BACSU1.845e-1229.34Uncharacterized ATPase yjoB OS=Bacillus subtilis G... [more]
YCF46_ODOSI2.039e-1126.63Uncharacterized AAA domain-containing protein ycf4... [more]
Y4KL_RHISN3.479e-1130.21Uncharacterized AAA family ATPase y4kL OS=Rhizobiu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-009-A05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756474 ID=EY756474; Name=EY756474; organism=Citrus sinensis; type=EST; length=926bp
CCACGCGTCCGGTGATATTCAAAAGCAGGAAATTCGTGAGGCTGTGGAGT
TACCGCTGACTCACCATGAGCTATACAAGCAAATTGGTATAGATCCTCCA
CGTGGTGTTTTACTTTATGGTCCTCCTGGAACTGGTAAAACTATGCTTGC
AAAGGCTGTTGCCAATCATACAACTGCAGCATTCATTAGAGTTGTTGGCT
CTGAGTTTGTTCAGAAGTACCTGGGTGAGGGTCCACGAATGGTTCGGGAT
GTTTTTCGTCTTGCTAAAGAGAATGCCCCAGCTATTATTTTTATTGATGA
GGTAGATGCTATAGCTACAGCTAGGTTTGATGCTCAAACTGGAGCTGATA
GAGAAGTTCAACGAATCCTTATGGAACTCCTCAATCAGATGGACGGATTT
GATCAGACTGTAAATGTTAAGGTCATCATGGCAACAAATCGGGCTGACAC
ATTGGACCCTGCACTTCTCCGTCCTGGAAGGCTTGACCGAAAAATTGAAT
TTCCTTTGCCTGATAGACGACAAAAGAGGCTCGTTTTTCAGGTTTGCACG
GCAAAGATGAACTTAAGCGATGAGGTAGACTTGGAGGATTATGTTTCCCG
TCCAGATAAAATCAGTGCTGCTGAGATTGCAGCCATCTGCCAAGAGGCAG
GAATGCATGCTGTGCGCAAGAACAGGTATGTCATACTCCCCAANNGACTT
TGAAAGGGTTATCGGACCAATGTGAAGAAGCCCGACACCGACTTCGAATT
TTTACAGTGAAGAGGGCTAGAAGAAGTTATGAAGATCACTTTGATAATGG
TNGNCAAATGTCTCTCTCACTATGAAAATTGNTGCCCCATGTCATGCATC
GCCACACTTGGGATATGCTTTATAGACTCATTGGCATATAATCCAGCTTT
AGTAGAGTAGCGTAAAATCGAAATCT
back to top