EY756464

Overview
NameEY756464
Unique NameEY756464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2492 contig Csv1_Contig2492:1168..1658. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756464 vs. ExPASy Swiss-Prot
Match: ISPH_MICAN (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Microcystis aeruginosa (strain NIES-843) GN=ispH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.316e-25
Identity = 52/91 (57.14%), Postives = 74/91 (81.32%), Query Frame = 1
Query:   13 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIK 285
            + L++V+GG+NSSNT+HLQEIA +R IPSY IDS +RI PGN+I +K +  +L+  +NWL +G+I +G+TSGASTPDK VE+V++K+F  K
Sbjct:  306 LSLMVVIGGYNSSNTTHLQEIAIERAIPSYHIDSAERILPGNRIEHKPLGDDLIITDNWLNEGKIVVGVTSGASTPDKVVEEVIEKIFAFK 396          
BLAST of EY756464 vs. ExPASy Swiss-Prot
Match: ISPH_SYNP2 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ispH PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.159e-25
Identity = 54/95 (56.84%), Postives = 73/95 (76.84%), Query Frame = 1
Query:   13 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEA 297
            +DL++V+GG+NSSNT+HLQEIA +R IPSY IDS  R+   N IA+K + GE+  + +WLP G++ IG+TSGASTPDK VEDV+ K+F  K + A
Sbjct:  306 LDLMVVIGGFNSSNTTHLQEIAVERNIPSYHIDSGDRLLGNNVIAHKPLDGEITTQTHWLPAGKLKIGVTSGASTPDKVVEDVIAKIFAEKAQPA 400          
BLAST of EY756464 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7424) GN=ispH PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.660e-23
Identity = 54/97 (55.67%), Postives = 71/97 (73.20%), Query Frame = 1
Query:   10 RVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEAL 300
            ++DL++V+GG+NSSNT+HLQEI+   GI SY IDS  RI   N I +K +  +L  KENWLP G+I +G+TSGASTPD  VE VL+K+F IK   A+
Sbjct:  305 KLDLMVVIGGFNSSNTTHLQEISIHHGIVSYHIDSAARIDLNNHIEHKPLGKDLEVKENWLPDGKIVVGVTSGASTPDIVVEQVLQKIFAIKSAVAM 401          
BLAST of EY756464 vs. ExPASy Swiss-Prot
Match: ISPH_TRIEI (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Trichodesmium erythraeum (strain IMS101) GN=ispH PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.236e-23
Identity = 49/92 (53.26%), Postives = 70/92 (76.09%), Query Frame = 1
Query:   10 RVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIK 285
            ++DL++V+GG+NSSNT+HLQE+A + GIPSY ID  +RI   NKI +K +  E+   E WLP+G + +G+TSGASTPD+AVED + K+  +K
Sbjct:  305 KLDLMVVIGGFNSSNTTHLQEMAIENGIPSYHIDGAQRILSRNKIEHKPLGREVKISEGWLPEGPVVVGLTSGASTPDQAVEDTINKIVAMK 396          
BLAST of EY756464 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP8 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 8801) GN=ispH PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.236e-23
Identity = 53/95 (55.79%), Postives = 70/95 (73.68%), Query Frame = 1
Query:   10 RVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREE 294
            ++DL++V+GG+NSSNT+HLQEI   +GI SY ID+  RI P N I +K +  +L  KENWLP+G I +GITSGASTPD  VE V++K+F  K  E
Sbjct:  305 KLDLMVVIGGFNSSNTTHLQEIPIYQGITSYHIDNATRIKPNNCIEHKPLGKDLEIKENWLPEGSIVVGITSGASTPDIIVEAVIEKIFSAKELE 399          
BLAST of EY756464 vs. ExPASy Swiss-Prot
Match: ISPH_SYNR3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain RCC307) GN=ispH PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.076e-22
Identity = 53/99 (53.54%), Postives = 75/99 (75.76%), Query Frame = 1
Query:   13 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEALQLA 309
            +DL++V+GG+NSSNT+HLQEIA  RGIPS  ID+ +RIGPGN + +K +  +L   E +LP+G + IGITSGASTPD+ VE V+ ++ ++   EA Q+A
Sbjct:  306 LDLMVVIGGYNSSNTTHLQEIAVSRGIPSVHIDAPERIGPGNAVEHKPLGQDLERLEPFLPEGDLRIGITSGASTPDRVVEGVIDRLLQL--AEAGQIA 402          
BLAST of EY756464 vs. ExPASy Swiss-Prot
Match: ISPH_GLOVI (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Gloeobacter violaceus GN=ispH PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.405e-22
Identity = 46/92 (50.00%), Postives = 72/92 (78.26%), Query Frame = 1
Query:   13 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGE-LVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIK 285
            +DL++V+GG+NSSNT+HLQEIA +RG+PS+ ID   R+     I ++ +H + LV  +NWLP G++T+G+T+GASTPD+ V +V+ ++FE+K
Sbjct:  300 LDLLVVIGGYNSSNTTHLQEIAVERGLPSFHIDGADRLVSAQFIEHRDLHSKSLVRTKNWLPAGEVTVGVTAGASTPDRVVAEVIARIFELK 391          
BLAST of EY756464 vs. ExPASy Swiss-Prot
Match: ISPH_PROM4 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9211) GN=ispH PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.106e-22
Identity = 50/96 (52.08%), Postives = 74/96 (77.08%), Query Frame = 1
Query:   13 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPG-NKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEA 297
            +DL++V+GG+NSSNT+HLQEIA  RGI S+ ID+ +RIG   N I +K +  +L+ ++N+LP+G I++GITSGASTPD+ VE V+ K+  +  E+A
Sbjct:  306 LDLLVVIGGFNSSNTTHLQEIAISRGIRSFHIDTPERIGDQENTITHKPLGDDLITEKNFLPEGNISVGITSGASTPDRVVEHVIHKLINLSEEKA 401          
BLAST of EY756464 vs. ExPASy Swiss-Prot
Match: ISPH_PROMM (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9313) GN=ispH PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.029e-21
Identity = 47/90 (52.22%), Postives = 70/90 (77.78%), Query Frame = 1
Query:   13 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 282
            +DL++V+GG+NSSNT+HLQEIA  RGI S+ ID+ +RIG  N I +K +  +L  + N+LP G +++GITSGASTPD+ VE V++K+ ++
Sbjct:  306 LDLLVVIGGFNSSNTTHLQEIAISRGIRSFHIDTPERIGDNNSIQHKPLGEDLFIESNFLPAGSVSVGITSGASTPDRVVEHVIQKLIDL 395          
BLAST of EY756464 vs. ExPASy Swiss-Prot
Match: ISPH_SYNPW (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain WH7803) GN=ispH PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.649e-21
Identity = 47/93 (50.54%), Postives = 70/93 (75.27%), Query Frame = 1
Query:   13 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKRE 291
            +DL++V+GG+NSSNT+HLQEIA +RGI S+ ID+ +RI   N I +K +  EL+ +  +LP G +T+GITSGASTPD+ VE V++++  +  E
Sbjct:  306 LDLMVVIGGYNSSNTTHLQEIAINRGIRSFHIDTPERISADNSIEHKPLGQELIRELEFLPSGTVTVGITSGASTPDRVVEHVIQRLISLSEE 398          
The following BLAST results are available for this feature:
BLAST of EY756464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ISPH_MICAN2.316e-2557.144-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNP25.159e-2556.844-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAP71.660e-2355.674-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_TRIEI8.236e-2353.264-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAP88.236e-2355.794-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNR31.076e-2253.544-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_GLOVI1.405e-2250.004-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM49.106e-2252.084-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMM2.029e-2152.224-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNPW2.649e-2150.544-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-008-H07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756464 ID=EY756464; Name=EY756464; organism=Citrus sinensis; type=EST; length=502bp
CCACGCGTCCGGGTCGATCTTATCTTGGTTGTTGGTGGGTGGAACTCGAG
CAATACCTCACACCTTCAAGAGATTGCAGAAGACCGTGGAATTCCCTCAT
ACTGGATCGATAGTGAGAAGAGAATAGGTCCCGGAAACAAAATAGCATAT
AAATTGATGCATGGTGAGCTGGTGGAGAAAGAAAATTGGCTGCCGAAAGG
CCAGATCACAATCGGTATAACATCCGGTGCCTCCACCCCAGATAAGGCTG
TTGAAGACGTCCTTAAAAAGGTATTTGAGATCAAGCGTGAAGAAGCCTTG
CAATTAGCGTAAACTGAGGTCCAAACATACACATTATCAATAAAGTTCGA
TGTGATTGTATCACTAGATATTGTAAAATTATAAACACAGCCCTCTGCCG
GGTCTTTTATCAGTGCCCATGTAATCTGAAATTTATATTTTTTGTGCAAT
ATGAAGCTAGAGATTACAATTTCTAACCAAAAAAAAAAAAAAAAAAAAAA
AA
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