EY756464

Overview
NameEY756464
Unique NameEY756464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2492 contig Csv1_Contig2492:1168..1658. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756464 vs. ExPASy Swiss-Prot
Match: ISPH_SYNPX (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain WH8102) GN=ispH PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.239e-19
Identity = 47/88 (53.41%), Postives = 68/88 (77.27%), Query Frame = 1
Query:   13 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRI-GPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKV 273
            +DL++V+GG+NSSNT+HLQEIA  RGI S+ ID+  R+    N I +K ++  L  + N+LP G +T+GITSGASTPD+AVE+V++K+
Sbjct:  306 LDLMVVIGGFNSSNTTHLQEIALSRGIRSFHIDTPDRLDAQANAIEHKPLNENLRLESNFLPAGPVTVGITSGASTPDRAVEEVIEKL 393          
BLAST of EY756464 vs. ExPASy Swiss-Prot
Match: ISPH_SYNS9 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9902) GN=ispH PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.231e-18
Identity = 47/91 (51.65%), Postives = 67/91 (73.63%), Query Frame = 1
Query:   13 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG-PGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 282
            +DL++V+GG+NSSNT+HLQEIA  RGI S+ ID+  RI    N I +K +  +L   + +LP G +T+GITSGASTPD+AVE V++K+  +
Sbjct:  306 LDLLVVIGGFNSSNTTHLQEIAVSRGIRSFHIDTPDRIDETTNSIEHKPLSEDLKRDQVFLPAGPVTVGITSGASTPDRAVEAVIEKLMRL 396          
BLAST of EY756464 vs. ExPASy Swiss-Prot
Match: ISPH_PROM9 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9312) GN=ispH PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 46/88 (52.27%), Postives = 65/88 (73.86%), Query Frame = 1
Query:   13 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG-PGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKV 273
            +D+++V+GG+NSSNT+HLQEIA  + I S+ ID+ +RI    N I +K +  +L  K N+LP G I +GITSGASTPDK V DV++K+
Sbjct:  306 LDILVVIGGFNSSNTTHLQEIAITKNITSFHIDTPERISVEENSILHKPLGLDLELKNNFLPSGNINVGITSGASTPDKVVADVIEKL 393          
The following BLAST results are available for this feature:
BLAST of EY756464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ISPH_SYNPX3.239e-1953.414-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNS91.231e-1851.654-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM94.677e-1852.274-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-008-H07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756464 ID=EY756464; Name=EY756464; organism=Citrus sinensis; type=EST; length=502bp
CCACGCGTCCGGGTCGATCTTATCTTGGTTGTTGGTGGGTGGAACTCGAG
CAATACCTCACACCTTCAAGAGATTGCAGAAGACCGTGGAATTCCCTCAT
ACTGGATCGATAGTGAGAAGAGAATAGGTCCCGGAAACAAAATAGCATAT
AAATTGATGCATGGTGAGCTGGTGGAGAAAGAAAATTGGCTGCCGAAAGG
CCAGATCACAATCGGTATAACATCCGGTGCCTCCACCCCAGATAAGGCTG
TTGAAGACGTCCTTAAAAAGGTATTTGAGATCAAGCGTGAAGAAGCCTTG
CAATTAGCGTAAACTGAGGTCCAAACATACACATTATCAATAAAGTTCGA
TGTGATTGTATCACTAGATATTGTAAAATTATAAACACAGCCCTCTGCCG
GGTCTTTTATCAGTGCCCATGTAATCTGAAATTTATATTTTTTGTGCAAT
ATGAAGCTAGAGATTACAATTTCTAACCAAAAAAAAAAAAAAAAAAAAAA
AA
back to top