EY756460

Overview
NameEY756460
Unique NameEY756460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS_ANASP (Ribulose bisphosphate carboxylase small chain OS=Anabaena sp. (strain PCC 7120) GN=cbbS PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.148e-19
Identity = 45/111 (40.54%), Postives = 68/111 (61.26%), Query Frame = 3
Query:  120 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 452
            +++ETLSYLPPL+D  + K++ Y+L  G+IP +EF            S P      YWT+WKLP++G   +  VL EV   + +YP  ++R++GFDN +Q Q +SF+  KP
Sbjct:    8 RRYETLSYLPPLTDVQIEKQVQYILSQGYIPAVEFN---------EVSEPTEL---YWTLWKLPLFGAKTSREVLAEVQSCRSQYPGHYIRVVGFDNIKQCQILSFIVHKP 106          
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS_CYAPA (Ribulose bisphosphate carboxylase small chain OS=Cyanophora paradoxa GN=rbcS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.444e-19
Identity = 41/111 (36.94%), Postives = 68/111 (61.26%), Query Frame = 3
Query:  120 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 452
            +KFET SYLPPL+D+ + +++ Y L +G+ P +EF            S  G  +   WT+WKLP++G      VL E+   ++++P++++R++ FD+ RQVQ + FL  KP
Sbjct:    7 RKFETFSYLPPLNDQQIARQLQYALSNGYSPAIEF------------SFTGKAEDLVWTLWKLPLFGAQSPEEVLSEIQACKQQFPNAYIRVVAFDSIRQVQTLMFLVYKP 105          
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS2_THIFE (Ribulose bisphosphate carboxylase small chain 2 OS=Thiobacillus ferrooxidans GN=cbbS2 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.694e-18
Identity = 44/106 (41.51%), Postives = 62/106 (58.49%), Query Frame = 3
Query:  123 KFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFL 440
            KFETLSYLP L+ + + ++++Y++  GW P +E            H+ P    G YW MWKLPM+G TD   +LKE     K  PH+ VRI+G+DN +Q Q  S +
Sbjct:   18 KFETLSYLPALTADEIRQQVAYIVSKGWNPAVE------------HTEPENAFGNYWYMWKLPMFGETDVDTILKEAERCHKRNPHNHVRIVGYDNFKQSQGTSLV 111          
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS_PSEHY (Ribulose bisphosphate carboxylase small chain OS=Pseudomonas hydrogenothermophila GN=cbbS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.188e-16
Identity = 41/111 (36.94%), Postives = 61/111 (54.95%), Query Frame = 3
Query:  120 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 452
            K+FET SYLP +S E + K+I Y++  GW P +E            H  P      YW MWKLPM+G TD   ++ E+   ++  P+  +++IG+DN RQ Q  + L  +P
Sbjct:   24 KRFETFSYLPQMSAEEIRKQIEYIVSKGWNPAIE------------HCEPENAILHYWYMWKLPMFGETDVDKIIAEIEACKRSNPNHLIKLIGYDNIRQTQGTAMLVYRP 122          
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS1_CHRVI (Ribulose bisphosphate carboxylase small chain 1 OS=Chromatium vinosum GN=cbbS1 PE=1 SV=4)

HSP 1 Score: 84.3445 bits (207), Expect = 5.898e-16
Identity = 40/100 (40.00%), Postives = 56/100 (56.00%), Query Frame = 3
Query:  120 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQ 419
            +KFET SYLP +  + + K++ Y++  GW P +E            H+ P      YW MWKLPM+G TD   +LKE     K +P++ VR+IGFDN  Q
Sbjct:   17 RKFETFSYLPRMDADRIRKQVEYIVSKGWNPAIE------------HTEPENAFDHYWYMWKLPMFGETDIDTILKEAEACHKAHPNNHVRLIGFDNYAQ 104          
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS_ALVHS (Ribulose bisphosphate carboxylase small chain OS=Alvinoconcha hessleri symbiotic bacterium GN=cbbS PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.314e-15
Identity = 42/112 (37.50%), Postives = 58/112 (51.79%), Query Frame = 3
Query:  120 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 455
            +KFET SYLP L  E + K++ Y++  GW P +E            H+ P      YW MWKLPM+G TD   +L E     K +P   VR+IG+DN  Q Q  + +  + P
Sbjct:   17 RKFETFSYLPELGVEKIRKQVEYIVSKGWNPAVE------------HTEPENAFDHYWYMWKLPMFGETDVDAILAEAEACHKAHPSHHVRLIGYDNYAQSQGTAMVIFRGP 116          
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS2_CHRVI (Ribulose bisphosphate carboxylase small chain 2 OS=Chromatium vinosum GN=cbbS2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.927e-15
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  123 KFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 452
            ++ET SYLPPL+ E +L++I Y+L +GW   LE            H  P      YW MWK+P +G  D   +L E+   ++ YP   VR++G+D   Q +  SFLA +P
Sbjct:   15 RYETFSYLPPLNREEILEQILYILDNGWNASLE------------HEHPDRAFEYYWPMWKMPFFGEQDPNVILTEIESCRRSYPDHHVRLVGYDTYAQSKGHSFLAHRP 112          
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS_THIDA (Ribulose bisphosphate carboxylase small chain OS=Thiobacillus denitrificans (strain ATCC 25259) GN=cbbS PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.823e-15
Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = 3
Query:  120 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 425
            +KFET SYLP ++   + K++ YL+  GW P +E            H+ P +    YW MWKLPM+G TD   +L E     K  P++ VR++G+DN  Q Q
Sbjct:   17 RKFETFSYLPAMNAADIRKQVEYLVSKGWNPAIE------------HTEPEHLMDSYWYMWKLPMFGETDIDRILGEAEACHKANPNNHVRLVGYDNFAQSQ 106          
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS1_HYDMR (Ribulose bisphosphate carboxylase small chain 1 OS=Hydrogenovibrio marinus GN=cbbS-1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.823e-15
Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = 3
Query:  120 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAK 449
            +K ET SYLP ++ + +  ++ Y++  GW P +E            HS P      YW MWKLPM+G TDA  VL EV    K  P++ VR+IG+DN  Q Q  + L  +
Sbjct:   17 RKAETFSYLPKMTTDQIKAQVEYIISKGWNPAIE------------HSEPENAFSYYWYMWKLPMFGDTDANVVLAEVDACIKANPNNHVRLIGYDNYAQSQGANMLVKR 114          
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS2_ACECL (Ribulose bisphosphate carboxylase small chain 2 (Fragment) OS=Acetabularia cliftonii GN=RBCS-2 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.112e-14
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 3
Query:  264 SPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 455
            S  Y D RYWTMWKLPM+GCTD + VL E+    K +P +++R++ FD  RQVQ   FL  +PP
Sbjct:   10 SSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 73          
The following BLAST results are available for this feature:
BLAST of EY756460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS_ANASP1.148e-1940.54Ribulose bisphosphate carboxylase small chain OS=A... [more]
RBS_CYAPA7.444e-1936.94Ribulose bisphosphate carboxylase small chain OS=C... [more]
RBS2_THIFE3.694e-1841.51Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS_PSEHY1.188e-1636.94Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS1_CHRVI5.898e-1640.00Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS_ALVHS1.314e-1537.50Ribulose bisphosphate carboxylase small chain OS=A... [more]
RBS2_CHRVI2.927e-1537.27Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS_THIDA3.823e-1538.24Ribulose bisphosphate carboxylase small chain OS=T... [more]
RBS1_HYDMR3.823e-1538.18Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS2_ACECL1.112e-1451.56Ribulose bisphosphate carboxylase small chain 2 (F... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-008-H03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756460 ID=EY756460; Name=EY756460; organism=Citrus sinensis; type=EST; length=660bp
CCACGCGTCCGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAAT
GACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGT
GTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGC
CACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCC
GGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCG
TGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGT
GGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCATGTTTTGAAGGAG
GTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGG
ATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAAGC
CACCAGGAGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAATA
TTGTTGATTATTATTATGTGGAACCCCCATAATGATCATTCGATCAAAGA
GGGTTCGGACTGCGTTTAATTTGTACTTAAGCTGCTGNTGCTGCTGCTCA
AACTTTGTTGGGTTTCNNCCCGCCGNGTAGATCTTCANTTTATAATTGTG
GCTTAAAAAA
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