EY756460

Overview
NameEY756460
Unique NameEY756460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12425 contig Csv1_Contig12425:177..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2)

HSP 1 Score: 243.432 bits (620), Expect = 7.597e-64
Identity = 111/149 (74.50%), Postives = 126/149 (84.56%), Query Frame = 3
Query:   12 SSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 458
            SS+ FP TKK N DITSIASNGGRV CM+VWPP  +KK+ETLSYLP LSDE LL EI YLL++GW+PCLEFE E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDAT VL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:   31 SSATFPVTKKQNLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 7.597e-64
Identity = 109/150 (72.67%), Postives = 129/150 (86.00%), Query Frame = 3
Query:   12 SSSAFPATKKTNN-DITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 458
            S+++FP TKK NN DITS+ASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YLL++GW+PCLEFE E G+VYREH+SSPGYYDGRYWTMWKLPM+GCTD T VL EV E +  YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:   31 SAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYREHNSSPGYYDGRYWTMWKLPMFGCTDGTQVLAEVQEAKNAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.296e-63
Identity = 109/149 (73.15%), Postives = 127/149 (85.23%), Query Frame = 3
Query:   12 SSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 458
            S+++FP ++K N DITSIASNGGRV CM+VWPP  +KK+ETLSYLP LSDE LL EI YLL++GW+PCLEFE E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDAT VL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:   31 STASFPVSRKQNLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.296e-63
Identity = 109/149 (73.15%), Postives = 127/149 (85.23%), Query Frame = 3
Query:   12 SSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 458
            S+++FP ++K N DITSIASNGGRV CM+VWPP  +KK+ETLSYLP LSDE LL EI YLL++GW+PCLEFE E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDAT VL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:   31 STASFPVSRKQNLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.296e-63
Identity = 107/149 (71.81%), Postives = 128/149 (85.91%), Query Frame = 3
Query:   12 SSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 458
            S++ FP ++K N DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP L+DE LLKE+ YLL++GW+PCLEFE E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDAT VL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:   32 SAATFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLTDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQECKKSYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.692e-63
Identity = 110/149 (73.83%), Postives = 126/149 (84.56%), Query Frame = 3
Query:   12 SSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 458
            S ++FP T+K+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLSD  LL ++ YLL +GWIPC+EFELE  +VYRE+H SPGY DGRYWTMWKLPMYGCTD   VL EV E +K YP +F+RIIGFDNKRQVQC+SF+A KPPG
Sbjct:   32 SIASFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNNGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAFKPPG 179          
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.210e-63
Identity = 111/149 (74.50%), Postives = 124/149 (83.22%), Query Frame = 3
Query:   12 SSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 458
            S+SAFP T+KT  DITSIASNGGRVQCM+VWPP G K +ETLSYLPPL+ E L KE+ YLLR GW+PCLEFELE G VYRE+H SPGYYDGRYWTMWKLPM+GCTDA  VL+E+ E+ K YP  + RIIGFDN RQVQCISFLA KP G
Sbjct:   33 STSAFPTTRKTTTDITSIASNGGRVQCMQVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIKAYPDCYGRIIGFDNVRQVQCISFLAYKPKG 181          
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS_GLYTO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tomentella GN=RBCS PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.210e-63
Identity = 111/148 (75.00%), Postives = 125/148 (84.46%), Query Frame = 3
Query:   12 SSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 455
            S + FP T+KTNNDI SIASNGGRVQCM+VWP TG KKFETLSYLP L D  L KE+ YLLR GWIPCLEFELE G+VYRE+H SPGYYDGRYWTMWKLP++GCTDA+ VLKE+ E +  YP+ F+RIIGFDN RQVQCISF+A KPP
Sbjct:   30 SMAGFP-TRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPVFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.210e-63
Identity = 109/147 (74.15%), Postives = 125/147 (85.03%), Query Frame = 3
Query:   12 SSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 452
            S+++FP T+K + DITSIASNGGRV+CM VWPP   KK+ETLSYLP LSDE LLKEI YLL+ GW+PCLEFE E G+VYREHH SPGYYDGRYWTMWKLPM+GCTDAT VL EV E +K YP +++RIIGFDN RQVQCISF+A KP
Sbjct:   31 SAASFPVTRKQDLDITSIASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.210e-63
Identity = 109/149 (73.15%), Postives = 127/149 (85.23%), Query Frame = 3
Query:   12 SSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 458
            S+ +FP + K N DITSIASNGGRVQCM+VWPP G KK+ETLSYLP L+DE LLKEI YLL  GW+PCLEFE E G+VYRE+H+SP YYDGRYWTMWKLPM+GCTDAT VL E+ E +K YP++++RIIGFDN RQVQCISF+A KPPG
Sbjct:   31 SAVSFPVSSKQNLDITSIASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPG 179          
The following BLAST results are available for this feature:
BLAST of EY756460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS2A_SOLLC7.597e-6474.50Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS0_SOLTU7.597e-6472.67Ribulose bisphosphate carboxylase small chain C, c... [more]
RBS3B_SOLLC1.296e-6373.15Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS3A_SOLLC1.296e-6373.15Ribulose bisphosphate carboxylase small chain 3A/3... [more]
RBS1_SOLTU1.296e-6371.81Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS3_AMAHP1.692e-6373.83Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS_HEVBR2.210e-6374.50Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GLYTO2.210e-6375.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CAPAN2.210e-6374.15Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_PETHY2.210e-6373.15Ribulose bisphosphate carboxylase small chain SSU8... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-008-H03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756460 ID=EY756460; Name=EY756460; organism=Citrus sinensis; type=EST; length=660bp
CCACGCGTCCGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAAT
GACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGT
GTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGC
CACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCC
GGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCG
TGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGT
GGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCATGTTTTGAAGGAG
GTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGG
ATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAAGC
CACCAGGAGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAATA
TTGTTGATTATTATTATGTGGAACCCCCATAATGATCATTCGATCAAAGA
GGGTTCGGACTGCGTTTAATTTGTACTTAAGCTGCTGNTGCTGCTGCTCA
AACTTTGTTGGGTTTCNNCCCGCCGNGTAGATCTTCANTTTATAATTGTG
GCTTAAAAAA
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