EY756458

Overview
NameEY756458
Unique NameEY756458
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756458_ssr546 microsatellite EY756458_ssr546:546..557. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER2_APHSA (Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.675e-22
Identity = 55/99 (55.56%), Postives = 66/99 (66.67%), Query Frame = 3
Query:  216 MATYKVKLITPEG--EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGK-XXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 503
            MATYKV LI  E      +E  DD  ILDA E+AG+DLP SCRAGSCSTCAGK             FL+DDQ+ AG+V+TCVAYPT D T+ TH++ E+
Sbjct:    1 MATYKVTLINEEEGINAILEVADDQTILDAGEEAGLDLPSSCRAGSCSTCAGKLVSGAAPNQDDQAFLDDDQLAAGWVMTCVAYPTGDCTIMTHQESEV 99          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER2_PLEBO (Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.847e-18
Identity = 41/95 (43.16%), Postives = 63/95 (66.32%), Query Frame = 3
Query:  216 MATYKVKLITPEGEQEIECP--DDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKD 494
            MATY+V+LI  +   +I  P  +DT +L+AAE+A +DLP+SC +G+CS+C GK            FL+++Q+  G+VL CV YP +D T+ TH++
Sbjct:    1 MATYQVRLINKKRNLDITLPVDEDTTVLEAAEEAELDLPFSCHSGACSSCVGKVVEGEINQDDQTFLDEEQVAKGFVLLCVTYPRTDCTIRTHQE 95          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER2_EQUTE (Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.847e-18
Identity = 43/93 (46.24%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  225 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 503
            YKV L TP+G+   +      ++D A +   DLP SC+AG+CSTC GK            FL+D+QI+ GYVLTC+A P SDV +ETHK++E+
Sbjct:    2 YKVTLKTPDGDITFDVEPGERLIDIASEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FERH_ANAVT (Ferredoxin, heterocyst OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH1 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 7.637e-18
Identity = 42/95 (44.21%), Postives = 63/95 (66.32%), Query Frame = 3
Query:  216 MATYKVKLITPEG--EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKD 494
            MATY+V+LI+ +   +  IE  ++T ILD AE+ GI+LP+SC +GSCS+C GK            FL+D+Q+  G+ L CV YP S+ T++TH++
Sbjct:    1 MATYQVRLISKKENIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQVGKGFALLCVTYPRSNCTIKTHQE 95          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER2_EQUAR (Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17
Identity = 42/93 (45.16%), Postives = 58/93 (62.37%), Query Frame = 3
Query:  225 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 503
            YKV L TP+G+   +      ++D   +   DLP SC+AG+CSTC GK            FL+D+QI+ GYVLTC+A P SDV +ETHK++E+
Sbjct:    2 YKVTLKTPDGDITFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FERH_FREDI (Ferredoxin, heterocyst OS=Fremyella diplosiphon GN=fdxH PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17
Identity = 41/95 (43.16%), Postives = 62/95 (65.26%), Query Frame = 3
Query:  216 MATYKVKLITPEGEQE--IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKD 494
            MATY+V+LI  + + +  IE  +DT IL+ A + GI+LP+SC +GSCS+C GK            FL+D+Q+  G+ L CV YP S+ T++TH++
Sbjct:    1 MATYQVRLINKKEDLDSTIEIDEDTTILEGAAENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMSKGFALLCVTYPRSNCTIKTHQE 95          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FERH_ANASP (Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC 7120) GN=fdxH PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17
Identity = 41/95 (43.16%), Postives = 63/95 (66.32%), Query Frame = 3
Query:  216 MATYKVKLITPEGEQE--IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKD 494
            MA+Y+V+LI  + + +  IE  ++T ILD AE+ GI+LP+SC +GSCS+C GK            FL+D+Q+  G+ L CV YP S+ T++TH++
Sbjct:    1 MASYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQE 95          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FERV_ANAVT (Ferredoxin, vegetative OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH2 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.148e-16
Identity = 40/95 (42.11%), Postives = 60/95 (63.16%), Query Frame = 3
Query:  216 MATYKVKLITPEGEQEIECPDD--TYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKD 494
            M TY+V+LI  +   +I  P D  T ILDAAE   I+LP+SC++GSCS+C  K            FL+++Q+  G+++ CV+YP SD T+ TH++
Sbjct:    1 MTTYQVRLINKKRAIDITIPVDENTTILDAAEQQDIELPFSCQSGSCSSCVAKVVEGEVDQSEQVFLDEEQMAKGFIVLCVSYPRSDCTIRTHQE 95          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER2_SYNP6 (Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF2 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14
Identity = 38/96 (39.58%), Postives = 54/96 (56.25%), Query Frame = 3
Query:  216 MATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 503
            MATY+V++I     Q      D  +LD+A+ AG+DLP SC  G C+TCA +             +  +    GY L CVAYP SD+ +ETHK++E+
Sbjct:    1 MATYQVEVIYQGQSQTFTADSDQSVLDSAQAAGVDLPASCLTGVCTTCAARILSGEVDQPDAMGVGPEPAKQGYTLLCVAYPRSDLKIETHKEDEL 96          
The following BLAST results are available for this feature:
BLAST of EY756458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER2_APHSA6.675e-2255.56Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2[more]
FER2_PLEBO5.847e-1843.16Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 S... [more]
FER2_EQUTE5.847e-1846.24Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1[more]
FERH_ANAVT7.637e-1844.21Ferredoxin, heterocyst OS=Anabaena variabilis (str... [more]
FER2_EQUAR1.701e-1745.16Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1[more]
FERH_FREDI3.790e-1743.16Ferredoxin, heterocyst OS=Fremyella diplosiphon GN... [more]
FERH_ANASP3.790e-1743.16Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC... [more]
FERV_ANAVT7.148e-1642.11Ferredoxin, vegetative OS=Anabaena variabilis (str... [more]
FER2_SYNP61.761e-1439.58Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 271... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-008-H01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756458 ID=EY756458; Name=EY756458; organism=Citrus sinensis; type=EST; length=732bp
CCACGCGTCCGGGTCACCAATTCTCTCTCTAGCTTCACATTCAGACACTC
AGAAAGCAACAGAAAATAACAATGGCCGCGCTCTCAAGCGCCATGGTCAG
CACCTCATTCATCAGAAACAAGCCAACAGTGACAAGCCTCAAGGCCATGC
CCAACATGGGTCAGGCTTTGTTTGGCCTTAAAGCCAACAACAACAGAGGT
GGACGTGTAATAGCCATGGCTACATACAAAGTCAAGCTCATTACACCCGA
GGGAGAGCAAGAAATTGAGTGTCCTGATGACACATATATTCTTGATGCAG
CTGAAGATGCTGGAATTGATCTCCCATATTCATGCAGGGCTGGTTCTTGC
TCTACTTGTGCTGGGAAAGTTGTCTCTGGTAGTGTTGACCAGTCAGATGG
AAGCTTTCTTGAGGATGATCAAATAGATGCAGGTTATGTTCTCACTTGTG
TTGCTTATCCTACAAGTGATGTTACTGTTGAGACACACAAGGATGAAGAA
ATGTCTTAATTATGCGGCGCTTTAATATAACATGGAGAATTTTGATATTA
TTATTATTAATATTGTGTATGGTTTGGTAATTTAGTGCCTTGTAAGGGGA
AATGTTGAATATTGACGTGCTTTCTTGAATGAGTAATATGAAAAGGGGGG
GATTTGCTCTGTACTTCCCATTGCTGTCACAAATGAAGNTGTTGTAGCTT
TACAATATAAAGATAGAATCATCTCTTTCTAT
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