EY756458

Overview
NameEY756458
Unique NameEY756458
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756458_ssr546 microsatellite EY756458_ssr546:546..557. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER_PORYE (Ferredoxin OS=Porphyra yezoensis GN=petF PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.895e-25
Identity = 54/98 (55.10%), Postives = 70/98 (71.43%), Query Frame = 3
Query:  216 MATYKVKLITPEGEQEI--ECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 503
            MA YK+ L+  E   ++   C +DTYILDAAE+ GI+LPYSCRAG+CSTCAGK            FL+DDQ+ AGYVLTC+AYP+SD T+ TH ++E+
Sbjct:    1 MADYKIHLLCEEEGIDVTFNCAEDTYILDAAEEEGIELPYSCRAGACSTCAGKVTEGTVDQADQSFLDDDQLLAGYVLTCIAYPSSDCTISTHVEQEL 98          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER4_ARATH (Probable ferredoxin-4, chloroplastic OS=Arabidopsis thaliana GN=FD4 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.424e-25
Identity = 55/112 (49.11%), Postives = 74/112 (66.07%), Query Frame = 3
Query:  171 FGLKANNNRGGRVIAMATYKVKLITPEGE-QEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 503
            FGL ++    G+V A  + KVKLI+PEGE QEIE  +D  IL++AE+AG++LPYSCR+G+C TC GK            FLE++QI  GY+LTC+A P  D  V THK  ++
Sbjct:   36 FGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDL 147          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER_BUMFI (Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.437e-24
Identity = 53/96 (55.21%), Postives = 68/96 (70.83%), Query Frame = 3
Query:  222 TYKVKLITPEGEQE--IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 503
            TY V L+  E      I+CPDD +ILDAAE+ GI+LPYSCRAG+CSTCAGK            FL+DDQ+ AG++LTCVAYPTSD  V+TH ++++
Sbjct:    2 TYSVTLVNEEKNINAVIKCPDDQFILDAAEEQGIELPYSCRAGACSTCAGKVLSGTIDQSEQSFLDDDQMGAGFLLTCVAYPTSDCKVQTHAEDDL 97          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER_RHOPL (Ferredoxin OS=Rhodymenia palmata PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.877e-24
Identity = 52/93 (55.91%), Postives = 67/93 (72.04%), Query Frame = 3
Query:  225 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 503
            Y V L TP G +EIE  + TY+LD+AED GIDLPYSCRAG+CSTCAG             FL+DDQ++  +VLTCVAYPTSD  ++TH++E++
Sbjct:    4 YTVTLSTPGGVEEIEGDETTYVLDSAEDQGIDLPYSCRAGACSTCAGIVELGTVDQSDQSFLDDDQLNDSFVLTCVAYPTSDCQIKTHQEEKL 96          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER_PORPU (Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.451e-24
Identity = 52/98 (53.06%), Postives = 71/98 (72.45%), Query Frame = 3
Query:  216 MATYKVKLITPEGEQEI--ECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 503
            MA YK+ L++ +   ++  +C +DTYILDAAE+AGI+LPYSCRAG+CSTCAGK            FL+D+Q+  GYVLTC+AYP SD T+ TH ++E+
Sbjct:    1 MADYKIHLLSEDEGIDVTFDCSEDTYILDAAEEAGIELPYSCRAGACSTCAGKVTEGSVDQSDQSFLDDEQLLKGYVLTCIAYPESDCTILTHVEQEL 98          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER2_NOSMU (Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.201e-24
Identity = 56/99 (56.57%), Postives = 72/99 (72.73%), Query Frame = 3
Query:  216 MATYKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 506
            MATYKV+L    EG ++ IE PDD YILDAAE+AG+DLP+SCR+GSCS+C G             FL+DDQI AG VLTCVAYPTS+  +ETH+++ ++
Sbjct:    1 MATYKVRLFNAAEGLDETIEVPDDEYILDAAEEAGLDLPFSCRSGSCSSCNGILKKGTVDQSDQNFLDDDQIAAGNVLTCVAYPTSNCEIETHREDAIA 99          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER2_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.131e-24
Identity = 51/95 (53.68%), Postives = 69/95 (72.63%), Query Frame = 3
Query:  225 YKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 503
            YK++L+   EG +  I CP D YILDAAE+ G+DLPYSCRAG+CSTCAGK            FL+++QI+ G++LTCVAYPTSD  ++TH++E +
Sbjct:    2 YKIQLVNQKEGVDVTINCPGDQYILDAAEEQGVDLPYSCRAGACSTCAGKLVKGSVDQSDQSFLDEEQINNGFILTCVAYPTSDCVIQTHQEEAL 96          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER_PORUM (Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.589e-23
Identity = 51/97 (52.58%), Postives = 69/97 (71.13%), Query Frame = 3
Query:  219 ATYKVKLITPEGEQEI--ECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 503
            A YK+ L++ E   ++  +C +DTYILDAAE+ GI+LPYSCRAG+CSTCAGK            FL+D+Q+  GYVLTC+AYP SD T+ TH ++E+
Sbjct:    1 ADYKIHLVSKEEGIDVTFDCSEDTYILDAAEEEGIELPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDEQMLKGYVLTCIAYPESDCTILTHVEQEL 97          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER1_EQUTE (Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.539e-23
Identity = 49/93 (52.69%), Postives = 65/93 (69.89%), Query Frame = 3
Query:  225 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 503
            YK  L TP GE  ++ P+ T ILDAAE+AG DLP+SCRAG+CS+C GK            FL+D Q++ G+VLTC+A P SD+ +ETHK+EE+
Sbjct:    2 YKTVLKTPSGEFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDQSEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER1_EQUAR (Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.539e-23
Identity = 49/93 (52.69%), Postives = 65/93 (69.89%), Query Frame = 3
Query:  225 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 503
            YK  L TP GE  ++ P+ T ILDAAE+AG DLP+SCRAG+CS+C GK            FL+D Q++ G+VLTC+A P SD+ +ETHK+EE+
Sbjct:    2 YKTVLKTPSGEFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94          
The following BLAST results are available for this feature:
BLAST of EY756458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_PORYE2.895e-2555.10Ferredoxin OS=Porphyra yezoensis GN=petF PE=3 SV=1[more]
FER4_ARATH8.424e-2549.11Probable ferredoxin-4, chloroplastic OS=Arabidopsi... [more]
FER_BUMFI1.437e-2455.21Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1[more]
FER_RHOPL1.877e-2455.91Ferredoxin OS=Rhodymenia palmata PE=1 SV=1[more]
FER_PORPU2.451e-2453.06Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2[more]
FER2_NOSMU3.201e-2456.57Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2[more]
FER2_CYACA7.131e-2453.68Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER_PORUM1.589e-2352.58Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV... [more]
FER1_EQUTE3.539e-2352.69Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1[more]
FER1_EQUAR3.539e-2352.69Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-008-H01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756458 ID=EY756458; Name=EY756458; organism=Citrus sinensis; type=EST; length=732bp
CCACGCGTCCGGGTCACCAATTCTCTCTCTAGCTTCACATTCAGACACTC
AGAAAGCAACAGAAAATAACAATGGCCGCGCTCTCAAGCGCCATGGTCAG
CACCTCATTCATCAGAAACAAGCCAACAGTGACAAGCCTCAAGGCCATGC
CCAACATGGGTCAGGCTTTGTTTGGCCTTAAAGCCAACAACAACAGAGGT
GGACGTGTAATAGCCATGGCTACATACAAAGTCAAGCTCATTACACCCGA
GGGAGAGCAAGAAATTGAGTGTCCTGATGACACATATATTCTTGATGCAG
CTGAAGATGCTGGAATTGATCTCCCATATTCATGCAGGGCTGGTTCTTGC
TCTACTTGTGCTGGGAAAGTTGTCTCTGGTAGTGTTGACCAGTCAGATGG
AAGCTTTCTTGAGGATGATCAAATAGATGCAGGTTATGTTCTCACTTGTG
TTGCTTATCCTACAAGTGATGTTACTGTTGAGACACACAAGGATGAAGAA
ATGTCTTAATTATGCGGCGCTTTAATATAACATGGAGAATTTTGATATTA
TTATTATTAATATTGTGTATGGTTTGGTAATTTAGTGCCTTGTAAGGGGA
AATGTTGAATATTGACGTGCTTTCTTGAATGAGTAATATGAAAAGGGGGG
GATTTGCTCTGTACTTCCCATTGCTGTCACAAATGAAGNTGTTGTAGCTT
TACAATATAAAGATAGAATCATCTCTTTCTAT
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