EY756440

Overview
NameEY756440
Unique NameEY756440
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756440 vs. ExPASy Swiss-Prot
Match: H42_TETPY (Histone H4, minor OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 9.898e-31
Identity = 66/76 (86.84%), Postives = 72/76 (94.74%), Query Frame = 2
Query:  149 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGF 376
            +I+GITKPAIRRLARRGGVKRIS  IY+++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGF
Sbjct:   26 SIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGF 101          
BLAST of EY756440 vs. ExPASy Swiss-Prot
Match: H41_TETPY (Histone H4, major OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 9.898e-31
Identity = 66/76 (86.84%), Postives = 72/76 (94.74%), Query Frame = 2
Query:  149 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGF 376
            +I+GITKPAIRRLARRGGVKRIS  IY+++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGF
Sbjct:   26 SIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGF 101          
BLAST of EY756440 vs. ExPASy Swiss-Prot
Match: H41_BLEJA (Histone H4-1 (Fragment) OS=Blepharisma japonicum PE=1 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 4.912e-30
Identity = 65/75 (86.67%), Postives = 73/75 (97.33%), Query Frame = 2
Query:  137 VLRDNIQGITKPAIRRLARRGGVKR-ISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 358
            V+R+NIQGITKPAIRRLARRGGVKR +SGL+Y+ETR VLK+FLENV+RDAVTYTEHARRKTVTA+DVVYALKRQG
Sbjct:   24 VIRENIQGITKPAIRRLARRGGVKRTLSGLVYDETRNVLKVFLENVVRDAVTYTEHARRKTVTALDVVYALKRQG 98          
BLAST of EY756440 vs. ExPASy Swiss-Prot
Match: H4_ENTHI (Histone H4 OS=Entamoeba histolytica PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.415e-30
Identity = 63/78 (80.77%), Postives = 73/78 (93.59%), Query Frame = 2
Query:  143 RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGF 376
            +D ++GITKPAIRRLARRGGVKRI+G +Y+ETR VLK FLE VIRD+VTYTEHA+R+TVTAMDVVYALKRQGRTLYG+
Sbjct:   40 QDALKGITKPAIRRLARRGGVKRINGAVYDETRNVLKQFLEQVIRDSVTYTEHAKRRTVTAMDVVYALKRQGRTLYGY 117          
BLAST of EY756440 vs. ExPASy Swiss-Prot
Match: H4_DICDI (Histone H4 OS=Dictyostelium discoideum GN=H4a PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 9.264e-29
Identity = 64/78 (82.05%), Postives = 70/78 (89.74%), Query Frame = 2
Query:  143 RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGF 376
            +++I GITKPAIRRLARRGGVKRIS  IYEETR VL+ FL NVIRD+V YTEHA R+TVTAMDVVYALKRQGRTLYGF
Sbjct:   29 KEHINGITKPAIRRLARRGGVKRISFPIYEETRNVLRTFLTNVIRDSVAYTEHAGRRTVTAMDVVYALKRQGRTLYGF 106          
BLAST of EY756440 vs. ExPASy Swiss-Prot
Match: H42_BLEJA (Histone H4 (Fragment) OS=Blepharisma japonicum GN=H4 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.842e-28
Identity = 61/75 (81.33%), Postives = 72/75 (96.00%), Query Frame = 2
Query:  137 VLRDNIQGITKPAIRRLARRGGVKR-ISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 358
            V+R+N QGITKPAIRRLARRGGVKR +SGL+Y+ETR VLK+FLE+V+RDAVTYTEHA+R+TVTA+DVVYALKRQG
Sbjct:   15 VIRENNQGITKPAIRRLARRGGVKRTLSGLVYDETRNVLKVFLESVVRDAVTYTEHAKRETVTALDVVYALKRQG 89          
BLAST of EY756440 vs. ExPASy Swiss-Prot
Match: H4G_HUMAN (Histone H4-like protein type G OS=Homo sapiens GN=HIST1H4G PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.340e-26
Identity = 63/77 (81.82%), Postives = 65/77 (84.42%), Query Frame = 2
Query:  137 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL 367
            VL DNIQGITK  IRRLAR GGVKRI GLIYEETR V K+FLENVI  AVT TEHA+RKTVTAM VVY LKRQGRTL
Sbjct:   22 VLSDNIQGITKCTIRRLARHGGVKRILGLIYEETRRVFKVFLENVIWYAVTNTEHAKRKTVTAMAVVYVLKRQGRTL 98          
The following BLAST results are available for this feature:
BLAST of EY756440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H42_TETPY9.898e-3186.84Histone H4, minor OS=Tetrahymena pyriformis PE=1 S... [more]
H41_TETPY9.898e-3186.84Histone H4, major OS=Tetrahymena pyriformis PE=1 S... [more]
H41_BLEJA4.912e-3086.67Histone H4-1 (Fragment) OS=Blepharisma japonicum P... [more]
H4_ENTHI6.415e-3080.77Histone H4 OS=Entamoeba histolytica PE=3 SV=1[more]
H4_DICDI9.264e-2982.05Histone H4 OS=Dictyostelium discoideum GN=H4a PE=1... [more]
H42_BLEJA7.842e-2881.33Histone H4 (Fragment) OS=Blepharisma japonicum GN=... [more]
H4G_HUMAN7.340e-2681.82Histone H4-like protein type G OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-008-F05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756440 ID=EY756440; Name=EY756440; organism=Citrus sinensis; type=EST; length=836bp
CCACGCGTCCGAGCAAATAAAAGAAGCATAAAATTAAAGAACTGAAAAGA
GAGAAAAGGAAAGCAGAAGAGAAATGTCAGGAAGAGGAAAGGGAGGCAAA
GGATTAGGAAAGGGAGGAGCGAAGAGGCACCGCAAGGTGCTGAGGGATAA
CATTCAGGGGATCACAAAGCCGGCTATCCGGCGGCTGGCGAGGCGTGGCG
GAGTCAAGCGTATCAGCGGTCTGATTTACGAGGAGACTCGCGGGGTTTTA
AAGATCTTTTTGGAGAACGTGATTCGTGATGCTGTGACTTACACTGAGCA
CGCTCGTCGTAAGACTGTCACCGCCATGGATGTTGTTTATGCTTTGAAGA
GGCAGGGCAGGACCCTTTACGGTTTTCGGTGGGTAATTTAAGGNTTTCTT
AATTTTTATGTTTTGAATGCTTATGGAGATCTGATGACTTTGGAATTTGG
GATGAAATTTGGCCTTCAAAGGAATTTTATGTTAATGTTGCTAAANNAAA
AANNANNANAAAANAAANNNNNAANNNNNGGGGGGGGGCCGCTTCAAAGA
GACCAACTTTACTACGGGGGGTGGGGAACGATAAATCTTTCAAAAGGGGC
CCAAATTTAATTCTGGGGGGGCGGTTTTAAAAGCGGGGGATGGGAGAACC
CGGGGGGTCACCCATTTAATCCCTTGGGGCACACCCCCTTTTCCCCGGGG
GGGGAAAAAAAAAAAGAGCCCCCCCAATTCCCCCCTTCAAAAATGGGCCC
CCTTAGGGGAGAAGAGGCGCCCCCTTTGGGGGGATTATTTAAGGGGGGGG
GGGGGGGTTCCCCCGGGGCCCCTCCCCTCCCTCCCC
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