EY756426

Overview
NameEY756426
Unique NameEY756426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length952
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756426_ssr148 microsatellite EY756426_ssr148:148..157. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_RICBR (50S ribosomal protein L20 OS=Rickettsia bellii (strain RML369-C) GN=rplT PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.077e-27
Identity = 57/104 (54.81%), Postives = 75/104 (72.12%), Query Frame = 1
Query:   64 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALVD 375
            K  +   K+I KLAKG+RGRA  C R+A E+VEK LQY+YRDRRN+KRD R LWIQRINA  R+HG+ Y  FM  L K  I ++RKVL+EL+++    F ++V+
Sbjct:    8 KISKNRHKKILKLAKGYRGRASTCFRVAIEKVEKGLQYAYRDRRNRKRDFRGLWIQRINAAVREHGLVYSQFMGALKKAEIDIDRKVLAELAVNNNEEFASIVE 111          
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_RICB8 (50S ribosomal protein L20 OS=Rickettsia bellii (strain OSU 85-389) GN=rplT PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.077e-27
Identity = 57/104 (54.81%), Postives = 75/104 (72.12%), Query Frame = 1
Query:   64 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALVD 375
            K  +   K+I KLAKG+RGRA  C R+A E+VEK LQY+YRDRRN+KRD R LWIQRINA  R+HG+ Y  FM  L K  I ++RKVL+EL+++    F ++V+
Sbjct:    8 KISKNRHKKILKLAKGYRGRASTCFRVAIEKVEKGLQYAYRDRRNRKRDFRGLWIQRINAAVREHGLVYSQFMGALKKAEIDIDRKVLAELAVNNNEEFASIVE 111          
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_RICPU (50S ribosomal protein L20 OS=Rickettsia peacockii (strain Rustic) GN=rplT PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.055e-26
Identity = 57/104 (54.81%), Postives = 76/104 (73.08%), Query Frame = 1
Query:   64 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALVD 375
            K  +   K+I K AKG+RGRA +C R+A E+VEKALQY+YRDRRN+KRD R LWIQRINA  R+HG+ Y  FM  L K  I ++RKVL+EL+++    F ++V+
Sbjct:    8 KISKNRHKKILKFAKGYRGRANSCFRVAIEKVEKALQYAYRDRRNRKRDFRGLWIQRINAAVREHGLVYSQFMGALKKTEIDIDRKVLAELAVNNSDGFVSIVE 111          
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_AZOC5 (50S ribosomal protein L20 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplT PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.055e-26
Identity = 57/102 (55.88%), Postives = 79/102 (77.45%), Query Frame = 1
Query:   85 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALVDISRNA 390
            K++FK AKGF GR KN IR A+  VE+++QY+YRDR+ KKR  R+LWIQRINAG R+ G+ YG F+ GL K  I+++RKVLS++++HEP   KALV+ ++ A
Sbjct:   15 KKVFKAAKGFYGRRKNTIRAAKSAVERSMQYNYRDRKVKKRTFRALWIQRINAGVRELGMTYGRFIDGLGKAGIEVDRKVLSDIAVHEPETLKALVEKAQAA 116          
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_RICTY (50S ribosomal protein L20 OS=Rickettsia typhi GN=rplT PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.799e-26
Identity = 58/107 (54.21%), Postives = 77/107 (71.96%), Query Frame = 1
Query:   64 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALVDISR 384
            K  +   K+I KLAKG+RGRA +C R+A E+VEKAL Y+YRDRRN+KRD R LWIQRINA  R+HG+ Y  FM  L K  I ++RKVL+EL+++    F ++V  S+
Sbjct:    8 KISKKRHKKILKLAKGYRGRANSCFRVAIEKVEKALLYAYRDRRNRKRDFRGLWIQRINAAVREHGLIYSQFMGALKKAGINIDRKVLAELAVNNNDGFTSIVQQSK 114          
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_RICAH (50S ribosomal protein L20 OS=Rickettsia akari (strain Hartford) GN=rplT PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.799e-26
Identity = 57/104 (54.81%), Postives = 76/104 (73.08%), Query Frame = 1
Query:   64 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALVD 375
            K  +   K+I KLAKG+RGRA +C R+A E+VEKALQY+YRDRRN+KRD R LWIQRINA  R+HG  Y  F+  L K  I ++RKVL+EL+++    F ++V+
Sbjct:    8 KISKNRHKKILKLAKGYRGRANSCFRVAIEKVEKALQYAYRDRRNRKRDFRGLWIQRINAAVREHGFVYSQFIGALKKAEIDIDRKVLAELAVNNSDGFASIVE 111          
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_ERYLH (50S ribosomal protein L20 OS=Erythrobacter litoralis (strain HTCC2594) GN=rplT PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.350e-26
Identity = 57/108 (52.78%), Postives = 77/108 (71.30%), Query Frame = 1
Query:   73 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALVDISRNAFP 396
            R   K +   AKG+RGR KN IRIAR+ VEKA QY+YRDR+ KKR  R+LWIQRINA  R  G+ Y  FMHG+    I+L+RKV+++L+M+E   FK+++D ++ A P
Sbjct:   11 RQKHKRLLDQAKGYRGRRKNTIRIARQAVEKAGQYAYRDRKVKKRSFRALWIQRINAAVRAEGLTYSQFMHGVKLAGIELDRKVMADLAMNEEAAFKSVIDQAKAALP 118          
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_DEIRA (50S ribosomal protein L20 OS=Deinococcus radiodurans GN=rplT PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.350e-26
Identity = 60/106 (56.60%), Postives = 72/106 (67.92%), Query Frame = 1
Query:   73 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALVDISRNA 390
            R   K++ K AKGF G      R A + +  A  Y YRDRRNKKRD R LWIQRINAG R HG+NY  F++GL + NI LNRKVL++++  EP  FKALVD SRNA
Sbjct:   11 RRRHKKVLKRAKGFWGSRSKQYRNAFQTLLNAATYEYRDRRNKKRDFRRLWIQRINAGARLHGMNYSTFINGLKRANIDLNRKVLADIAAREPEAFKALVDASRNA 116          
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_RALPJ (50S ribosomal protein L20 OS=Ralstonia pickettii (strain 12J) GN=rplT PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.838e-26
Identity = 55/101 (54.46%), Postives = 75/101 (74.26%), Query Frame = 1
Query:   73 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALVD 375
            R   K++   AKGFRGR  N  RIA++ V +A QY+YRDRRNKKR  R+LWI RINAG R+HG+ Y  FM+GL K +I+L+RKVLS++++H+   F A+V+
Sbjct:   11 RARHKKVISAAKGFRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRALWIARINAGAREHGLTYSKFMNGLKKASIELDRKVLSDMAIHDKVAFAAIVN 111          
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_BRUSU (50S ribosomal protein L20 OS=Brucella suis GN=rplT PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.838e-26
Identity = 56/112 (50.00%), Postives = 78/112 (69.64%), Query Frame = 1
Query:   85 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALVDISRNAFPGNKNLVHP 420
            K++   A GFRGR KN IR A+  V+++ QY+YRDR+N+KR  R+LWIQRINA  R+ G+ YG F+ GL K  I+++RKVLS++++HEP  F ALV  ++ A    KN   P
Sbjct:   15 KKVLDQAAGFRGRRKNTIRTAKAAVDRSKQYAYRDRKNRKRSFRALWIQRINAAVREQGLTYGRFIDGLAKAGIEIDRKVLSDIAIHEPEAFAALVASAKKALEYLKNTSMP 126          
The following BLAST results are available for this feature:
BLAST of EY756426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL20_RICBR8.077e-2754.8150S ribosomal protein L20 OS=Rickettsia bellii (st... [more]
RL20_RICB88.077e-2754.8150S ribosomal protein L20 OS=Rickettsia bellii (st... [more]
RL20_RICPU1.055e-2654.8150S ribosomal protein L20 OS=Rickettsia peacockii ... [more]
RL20_AZOC51.055e-2655.8850S ribosomal protein L20 OS=Azorhizobium caulinod... [more]
RL20_RICTY1.799e-2654.2150S ribosomal protein L20 OS=Rickettsia typhi GN=r... [more]
RL20_RICAH1.799e-2654.8150S ribosomal protein L20 OS=Rickettsia akari (str... [more]
RL20_ERYLH2.350e-2652.7850S ribosomal protein L20 OS=Erythrobacter litoral... [more]
RL20_DEIRA2.350e-2656.6050S ribosomal protein L20 OS=Deinococcus radiodura... [more]
RL20_RALPJ6.838e-2654.4650S ribosomal protein L20 OS=Ralstonia pickettii (... [more]
RL20_BRUSU6.838e-2650.0050S ribosomal protein L20 OS=Brucella suis GN=rplT... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-008-E01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756426 ID=EY756426; Name=EY756426; organism=Citrus sinensis; type=EST; length=952bp
TTTCGTCGACCCACNCGTCCGGAATCGAATGTTCCCATTCATCATTGTTT
AAGGATTAAAGAAAAGAGAGAAAGGATGAACAAGAAGGAGATATTTAAGC
TGGCAAAGGGGTTCAGAGGAAGAGCGAAAAATTGCATAAGAATAGCAAGA
GAGAGAGTGGAGAAAGCATTGCAGTATTCCTACAGAGACCGCCGCAACAA
GAAGCGTGACATGCGCTCCCTTTGGATTCAACGCATCAACGCCGGCACTC
GCCAACACGGCGTTAACTATGGTAACTTTATGCATGGACTGATGAAGGAC
AACATCCAACTGAACAGGAAAGTTCTGTCAGAGCTGTCGATGCATGAACC
ATATAGGTTCAAGGCCCTTGTAGACATCTCTCGCAATGCCTTCCCTGGAA
ACAAAAATCTTGTGCATCCTCCCAGAAAGGCTGACATTTCAATCAATGCG
TAGTTAGTAATTAGCGACCCGAATATTGCATTCTTTAGCATTTTACTATT
ACTGGCATGCAAAGGATGCGCTTTGACGAACCCATTATACTGCTTATGTG
TTTTCCCAAGAATTTGACGGTCCACACTGATTAATACCTTTTGCGGTGAA
AAATGGTTTGAATCAGAATTTCGGAGGTTTCCTGATGGTATTCATGCTTG
CCAGGTTAAGGAGGACCTTTTCTTTTTCTCACTCCTACCCAGGGCGCCTT
TACAAAAAAAAAAAAAAAATAAGCGGGTTCCCTCCTTAAGGGATCCCTAC
TTCACTAATCGCCGCCGCGACCTCCAACGCTCCTTCTTATCGTGTACATT
AACCCCTTCCTCTCGGCCGAGCTTTACCCACCCCCGCGCTGTGAAAAACC
GTGGGGGGCCCAACAAAATTCTCTTTGAGAACCTCTCCCTTTTCGCCAGG
GGGAATAAAACCACAAGCCCGCCCCTCTCACCCCCCCAAAATTTCCACAC
TC
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