EY756426

Overview
NameEY756426
Unique NameEY756426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length952
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756426_ssr148 microsatellite EY756426_ssr148:148..157. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_NEIMF (50S ribosomal protein L20 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=rplT PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.900e-24
Identity = 52/106 (49.06%), Postives = 79/106 (74.53%), Query Frame = 1
Query:   73 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALVDISRNA 390
            R   ++IF LAKG+RGR KN  R+A++ V KA QY+YRDRR +KR  R LWI RINAG R++G++Y  FM+GL + +I+++RKVL++L++ +   F  LV+ +++A
Sbjct:   11 RARHQKIFALAKGYRGRRKNVYRVAKQAVMKAGQYAYRDRRQRKRQFRQLWIVRINAGARENGLSYSKFMNGLKRASIEIDRKVLADLAVFDKAAFAQLVEKAKSA 116          
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_METPP (50S ribosomal protein L20 OS=Methylibium petroleiphilum (strain PM1) GN=rplT PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.900e-24
Identity = 52/101 (51.49%), Postives = 74/101 (73.27%), Query Frame = 1
Query:   73 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALVD 375
            R   K++ +LAKGFRGR KN  RIA++ V KA QY+YRDRRN+KR  R LWI RINA +R HG+ Y  F+ G+ K  I ++RK+L+EL++++P  F ++V+
Sbjct:   11 RARHKKVLELAKGFRGRRKNVYRIAKQAVMKAGQYAYRDRRNRKRVFRRLWIARINAASRSHGITYSRFIAGIKKAAIDIDRKMLAELAVNDPAAFGSIVE 111          
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_BARHE (50S ribosomal protein L20 OS=Bartonella henselae GN=rplT PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.900e-24
Identity = 52/102 (50.98%), Postives = 74/102 (72.55%), Query Frame = 1
Query:   85 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALVDISRNA 390
            K++ K A+GF GR KN IR A+  V+++ QY+YRDR+N+KR  R+LWIQRINA  R  G+ YG F+ GL K  I+++RKVLS++++HE   F ALV  ++ A
Sbjct:   15 KKVLKQAEGFYGRRKNTIRAAKAAVDRSKQYAYRDRKNRKRTFRALWIQRINAAVRAEGLTYGRFIDGLSKAGIEIDRKVLSDIAIHESAAFSALVASAKKA 116          
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_ANAMM (50S ribosomal protein L20 OS=Anaplasma marginale (strain St. Maries) GN=rplT PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.900e-24
Identity = 52/100 (52.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:   73 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALV 372
            R   K++  LAKG+RGR+KNC R A +R+EKAL Y+YRDRRN+KRD R LWI RINA  RQ G+ Y   M G+    I+LNRK+L+E+++++   F+ +V
Sbjct:   11 RARHKKVVALAKGYRGRSKNCYRAALQRLEKALVYAYRDRRNRKRDFRRLWIVRINAAARQWGIKYSQLMKGMALCGIELNRKMLAEMAVNDKAAFEKVV 110          
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_ANAMF (50S ribosomal protein L20 OS=Anaplasma marginale (strain Florida) GN=rplT PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.900e-24
Identity = 52/100 (52.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:   73 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALV 372
            R   K++  LAKG+RGR+KNC R A +R+EKAL Y+YRDRRN+KRD R LWI RINA  RQ G+ Y   M G+    I+LNRK+L+E+++++   F+ +V
Sbjct:   11 RARHKKVVALAKGYRGRSKNCYRAALQRLEKALVYAYRDRRNRKRDFRRLWIVRINAAARQWGIKYSQLMKGMALCGIELNRKMLAEMAVNDKAAFEKVV 110          
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_AGRT5 (50S ribosomal protein L20 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplT PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.900e-24
Identity = 53/106 (50.00%), Postives = 75/106 (70.75%), Query Frame = 1
Query:   73 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALVDISRNA 390
            R    +  K AKGF GR KN IR A+  V+++ QY+YRDR+  KR+ R+LWIQRINA  R+ G+ YG F+ GL K  I+++RKVLS++++HEP  F ALV+ ++ A
Sbjct:   11 RAKHTKTLKAAKGFYGRRKNTIRAAKAAVDRSKQYAYRDRKVNKRNFRALWIQRINAAVRESGLTYGRFIDGLNKAGIEVDRKVLSDMAIHEPAAFGALVEAAKKA 116          
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_XANP2 (50S ribosomal protein L20 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplT PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.400e-24
Identity = 55/104 (52.88%), Postives = 78/104 (75.00%), Query Frame = 1
Query:   85 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTR--QHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALVDISRNA 390
            K++F+ AKGF GR KN IR A+  VE+++QY+YRDR+ KKR+ R+LWIQRINAG R     + Y  F+ GL K  I+++RKVLS++++HEP  FKALV+ ++ A
Sbjct:   15 KKVFEAAKGFYGRRKNTIRAAKSAVERSMQYAYRDRKVKKRNFRALWIQRINAGVRALDLDLTYSRFIDGLGKAGIEVDRKVLSDIAIHEPDAFKALVEKAKAA 118          
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_RHOFD (50S ribosomal protein L20 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=rplT PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.400e-24
Identity = 54/101 (53.47%), Postives = 71/101 (70.30%), Query Frame = 1
Query:   73 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALVD 375
            R   K++  LAKGFRGR  N  R+A+E V KA QY+YRDRR KKR  R LWI RINA  RQ G+ Y  F +GL K NI+++RKVLS++++H+   F ++VD
Sbjct:   11 RARHKKVLALAKGFRGRRGNVYRVAKEAVMKAGQYAYRDRRTKKRVFRQLWIARINAAARQCGMTYSQFANGLKKANIEIDRKVLSDIAVHDMAAFASIVD 111          
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_FLAPJ (50S ribosomal protein L20 OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=rplT PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.400e-24
Identity = 53/102 (51.96%), Postives = 74/102 (72.55%), Query Frame = 1
Query:   70 ERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALVD 375
            +R  +K+I K AKGF GR KN   +A+  VEKA+ Y+YRDR+  KR+ R+LWIQRINAG R  G++Y  FM  + K NI+LNRKVL++L+M+ P  FK +++
Sbjct:   10 KRARRKKIMKQAKGFFGRRKNVWTVAKNAVEKAMCYAYRDRKVNKRNFRALWIQRINAGARLEGMSYSQFMGKVKKHNIELNRKVLADLAMNHPVAFKTILN 111          
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_DESOH (50S ribosomal protein L20 OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=rplT PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.400e-24
Identity = 54/112 (48.21%), Postives = 76/112 (67.86%), Query Frame = 1
Query:   49 LRIKEK-RERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALVDIS 381
            +RIK   + R  +K+I KLAKGFRG      + A+  V+KAL Y+YRDR+ +KRD R LWI RINA  R H ++Y  FMHGL K  ++L+RKVL+EL++ +P  F  +V ++
Sbjct:    1 MRIKRGFKARHRRKKILKLAKGFRGGHSKLFKTAKNTVDKALGYAYRDRKQRKRDFRRLWIARINAAVRMHSLSYSRFMHGLKKAGVELDRKVLAELAISDPSGFSKVVAVA 112          
The following BLAST results are available for this feature:
BLAST of EY756426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL20_NEIMF4.900e-2449.0650S ribosomal protein L20 OS=Neisseria meningitidi... [more]
RL20_METPP4.900e-2451.4950S ribosomal protein L20 OS=Methylibium petroleip... [more]
RL20_BARHE4.900e-2450.9850S ribosomal protein L20 OS=Bartonella henselae G... [more]
RL20_ANAMM4.900e-2452.0050S ribosomal protein L20 OS=Anaplasma marginale (... [more]
RL20_ANAMF4.900e-2452.0050S ribosomal protein L20 OS=Anaplasma marginale (... [more]
RL20_AGRT54.900e-2450.0050S ribosomal protein L20 OS=Agrobacterium tumefac... [more]
RL20_XANP26.400e-2452.8850S ribosomal protein L20 OS=Xanthobacter autotrop... [more]
RL20_RHOFD6.400e-2453.4750S ribosomal protein L20 OS=Rhodoferax ferrireduc... [more]
RL20_FLAPJ6.400e-2451.9650S ribosomal protein L20 OS=Flavobacterium psychr... [more]
RL20_DESOH6.400e-2448.2150S ribosomal protein L20 OS=Desulfococcus oleovor... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-008-E01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756426 ID=EY756426; Name=EY756426; organism=Citrus sinensis; type=EST; length=952bp
TTTCGTCGACCCACNCGTCCGGAATCGAATGTTCCCATTCATCATTGTTT
AAGGATTAAAGAAAAGAGAGAAAGGATGAACAAGAAGGAGATATTTAAGC
TGGCAAAGGGGTTCAGAGGAAGAGCGAAAAATTGCATAAGAATAGCAAGA
GAGAGAGTGGAGAAAGCATTGCAGTATTCCTACAGAGACCGCCGCAACAA
GAAGCGTGACATGCGCTCCCTTTGGATTCAACGCATCAACGCCGGCACTC
GCCAACACGGCGTTAACTATGGTAACTTTATGCATGGACTGATGAAGGAC
AACATCCAACTGAACAGGAAAGTTCTGTCAGAGCTGTCGATGCATGAACC
ATATAGGTTCAAGGCCCTTGTAGACATCTCTCGCAATGCCTTCCCTGGAA
ACAAAAATCTTGTGCATCCTCCCAGAAAGGCTGACATTTCAATCAATGCG
TAGTTAGTAATTAGCGACCCGAATATTGCATTCTTTAGCATTTTACTATT
ACTGGCATGCAAAGGATGCGCTTTGACGAACCCATTATACTGCTTATGTG
TTTTCCCAAGAATTTGACGGTCCACACTGATTAATACCTTTTGCGGTGAA
AAATGGTTTGAATCAGAATTTCGGAGGTTTCCTGATGGTATTCATGCTTG
CCAGGTTAAGGAGGACCTTTTCTTTTTCTCACTCCTACCCAGGGCGCCTT
TACAAAAAAAAAAAAAAAATAAGCGGGTTCCCTCCTTAAGGGATCCCTAC
TTCACTAATCGCCGCCGCGACCTCCAACGCTCCTTCTTATCGTGTACATT
AACCCCTTCCTCTCGGCCGAGCTTTACCCACCCCCGCGCTGTGAAAAACC
GTGGGGGGCCCAACAAAATTCTCTTTGAGAACCTCTCCCTTTTCGCCAGG
GGGAATAAAACCACAAGCCCGCCCCTCTCACCCCCCCAAAATTTCCACAC
TC
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