EY756417

Overview
NameEY756417
Unique NameEY756417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGS_BETVU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic (Fragment) OS=Beta vulgaris GN=AGPB1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 8.054e-25
Identity = 59/77 (76.62%), Postives = 65/77 (84.42%), Query Frame = 3
Query:   12 DADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            DADR+FLAAKGSVPIGIG            NARIGD+VKI+NSD+VQEAARETDGYFIKSGIVTIIKDA+IPSGT+I
Sbjct:  425 DADRKFLAAKGSVPIGIG------------NARIGDDVKIINSDNVQEAARETDGYFIKSGIVTIIKDAMIPSGTVI 489          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGC_CYAA5 (Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain ATCC 51142) GN=glgC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.331e-19
Identity = 42/74 (56.76%), Postives = 61/74 (82.43%), Query Frame = 3
Query:   21 RRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            R+ L  +G +P+GIGK S I+RAI+DKNARIG NV IVN ++++E+ RE DG++I++GIV +IK+A+IP GT+I
Sbjct:  356 RQSLLDQGKIPVGIGKGSTIRRAIVDKNARIGQNVTIVNKENIEESNREDDGFYIRNGIVVVIKNAVIPDGTVI 429          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGC_ANAVT (Glucose-1-phosphate adenylyltransferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=glgC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.126e-18
Identity = 43/75 (57.33%), Postives = 61/75 (81.33%), Query Frame = 3
Query:   18 DRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            +R+    KG +P+GIG ++ I+RAIIDKNARIG +VKI+N D+VQEA RE+ G++I+SGIV ++K+A+I  GTII
Sbjct:  355 ERQCSIDKGDIPVGIGPDTIIRRAIIDKNARIGHDVKIINKDNVQEADRESQGFYIRSGIVVVLKNAVITDGTII 429          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGC_ANASP (Glucose-1-phosphate adenylyltransferase OS=Anabaena sp. (strain PCC 7120) GN=glgC PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.126e-18
Identity = 43/75 (57.33%), Postives = 61/75 (81.33%), Query Frame = 3
Query:   18 DRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            +R+    KG +P+GIG ++ I+RAIIDKNARIG +VKI+N D+VQEA RE+ G++I+SGIV ++K+A+I  GTII
Sbjct:  355 ERQCSIDKGDIPVGIGPDTIIRRAIIDKNARIGHDVKIINKDNVQEADRESQGFYIRSGIVVVLKNAVITDGTII 429          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGC_SYNPW (Glucose-1-phosphate adenylyltransferase OS=Synechococcus sp. (strain WH7803) GN=glgC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.509e-18
Identity = 40/76 (52.63%), Postives = 58/76 (76.32%), Query Frame = 3
Query:   15 ADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            ++R  L  +G +P+G+GK + +KRAI+DKNARIG NV IVN D V+EA R   G++I++GIV ++K+A IP GT+I
Sbjct:  356 SERAVLRERGGIPLGVGKGTTVKRAILDKNARIGSNVTIVNKDHVEEADRPEHGFYIRNGIVVVVKNASIPDGTVI 431          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGC_NOSP7 (Glucose-1-phosphate adenylyltransferase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=glgC PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.301e-18
Identity = 42/75 (56.00%), Postives = 59/75 (78.67%), Query Frame = 3
Query:   18 DRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            +R+    +  +P+GIG ++ I+ AIIDKNARIG +VKIVN D+VQEA RE  G++I+SGIV ++K+A+IP GTII
Sbjct:  355 ERQCSLIENDIPVGIGTDTIIRGAIIDKNARIGHDVKIVNKDNVQEAERENQGFYIRSGIVVVLKNAVIPDGTII 429          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGC_CYAP4 (Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=glgC PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.245e-17
Identity = 41/79 (51.90%), Postives = 61/79 (77.22%), Query Frame = 3
Query:    6 RPDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            +P A+R       SVP+GIG ++ ++RAI+DKNA IG NVKIVN D V+EA RE++G++I++GIV ++K+A+IP  T+I
Sbjct:  351 QPFAERDHKIKNNSVPLGIGADTIVRRAIVDKNACIGRNVKIVNKDHVEEANRESEGFYIRNGIVVVLKNAVIPDNTVI 429          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGL3_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.627e-17
Identity = 43/77 (55.84%), Postives = 57/77 (74.03%), Query Frame = 3
Query:   12 DADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            DA+ R   A+G VP+GIG+N+ IK  IIDKNARIG NV I NS+ VQEA R ++G+++ SGI  I K++ IP GT+I
Sbjct:  407 DAEIRSQLAEGKVPLGIGENTRIKDCIIDKNARIGKNVVIANSEGVQEADRSSEGFYMASGITVISKNSTIPDGTVI 483          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGC_SYNP2 (Glucose-1-phosphate adenylyltransferase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=glgC PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.774e-17
Identity = 42/79 (53.16%), Postives = 59/79 (74.68%), Query Frame = 3
Query:    6 RPDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            +P   R+    +G  PIGIG+ + I+RAIIDKNARIG NV IVN ++V+E+ RE  GY+I+SGI  ++K+A+IP GT+I
Sbjct:  351 QPYEKRQDCLRRGKPPIGIGEGTTIRRAIIDKNARIGKNVMIVNKENVEESNREELGYYIRSGITVVLKNAVIPDGTVI 429          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGC_CYAP7 (Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain PCC 7424) GN=glgC PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.774e-17
Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 3
Query:   21 RRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            R+ +   G VP GIG  + I+RAIIDKNARIG NV I+N D ++EA RE +G+ I+SGIV +IK+A IP GT+I
Sbjct:  356 RKAVLEAGKVPQGIGAGTTIRRAIIDKNARIGRNVLIINKDRIEEAEREDEGFLIRSGIVVVIKNATIPDGTVI 429          
The following BLAST results are available for this feature:
BLAST of EY756417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
GLGS_BETVU8.054e-2576.62Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGC_CYAA51.331e-1956.76Glucose-1-phosphate adenylyltransferase OS=Cyanoth... [more]
GLGC_ANAVT1.126e-1857.33Glucose-1-phosphate adenylyltransferase OS=Anabaen... [more]
GLGC_ANASP1.126e-1857.33Glucose-1-phosphate adenylyltransferase OS=Anabaen... [more]
GLGC_SYNPW2.509e-1852.63Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]
GLGC_NOSP77.301e-1856.00Glucose-1-phosphate adenylyltransferase OS=Nostoc ... [more]
GLGC_CYAP41.245e-1751.90Glucose-1-phosphate adenylyltransferase OS=Cyanoth... [more]
GLGL3_SOLTU1.627e-1755.84Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGC_SYNP22.774e-1753.16Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]
GLGC_CYAP72.774e-1756.76Glucose-1-phosphate adenylyltransferase OS=Cyanoth... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-008-D04-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756417 ID=EY756417; Name=EY756417; organism=Citrus sinensis; type=EST; length=490bp
CCACGCGTCCGGATGCGGACAGGAGGTTTTTGGCTGCAAAGGGTAGTGTT
CCAATTGGTATTGGCAAGAATTCTCACATCAAGAGAGCAATAATCGACAA
AAATGCTCGAATTGGGGATAATGTGAAGATCGTCAACAGTGACAGTGTGC
AAGAAGCAGCAAGGGAAACAGATGGATACTTCATCAAGAGCGGGATTGTC
ACAATAATCAAGGATGCCTTGATTCCCAGTGGAACCATAATCTAAACTGT
CGTCTTCTCTTCTCAGTTTCATCCCAAGCTACGGGCACCTTCCCCTCTAC
GCTCGAGAATGTCGTAATATCGAGTCTGCTTCCACTTTACCTTTGGCCAT
CTTTTTGCTATAAGCTGTATATTTCCGGGCGGTGTAATGTTAATTATGAG
AGGAAAATAGGACCTGGAAAAGGGACATGCTGTAAAGGTCTAGTTATGCA
GAAATAAAATCTTTCATTCTATTCTAAAAAAAAAAAAAAA
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