EY756417

Overview
NameEY756417
Unique NameEY756417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5044 contig Csv1_Contig5044:1392..1881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGL1_ARATH (Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic OS=Arabidopsis thaliana GN=ADG2 PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 4.732e-17
Identity = 40/77 (51.95%), Postives = 59/77 (76.62%), Query Frame = 3
Query:   12 DADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            +A+   L A+G+VPIGIG+N+ I+  IIDKNAR+G NV I NS+ +QEA R +DG++I+SGI  I+K+++I  G +I
Sbjct:  446 EAEVAALLAEGNVPIGIGENTKIQECIIDKNARVGKNVIIANSEGIQEADRSSDGFYIRSGITVILKNSVIKDGVVI 522          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGL1_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 1 (Fragment) OS=Solanum tuberosum GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.181e-17
Identity = 40/71 (56.34%), Postives = 55/71 (77.46%), Query Frame = 3
Query:   30 LAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            L A+G VPIGIG+N+ I++ IIDKNA+IG NV I+N D VQEA R  +G++I+SGI+ I++ A I  GT+I
Sbjct:  400 LLAEGKVPIGIGENTKIRKCIIDKNAKIGKNVSIINKDGVQEADRPEEGFYIRSGIIIILEKATIRDGTVI 470          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGC_SYNP6 (Glucose-1-phosphate adenylyltransferase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=glgC PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.072e-17
Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = 3
Query:   36 AKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            A G VP+GIG  S I+RAI+DKNA IG NV+IVN D V+EA RE  G+ I+SGIV ++K A+IP  T+I
Sbjct:  362 ANGKVPMGIGSGSTIRRAIVDKNAHIGQNVQIVNKDHVEEADREDLGFMIRSGIVVVVKGAVIPDNTVI 430          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGC_SYNE7 (Glucose-1-phosphate adenylyltransferase OS=Synechococcus elongatus (strain PCC 7942) GN=glgC PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.072e-17
Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = 3
Query:   36 AKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            A G VP+GIG  S I+RAI+DKNA IG NV+IVN D V+EA RE  G+ I+SGIV ++K A+IP  T+I
Sbjct:  362 ANGKVPMGIGSGSTIRRAIVDKNAHIGQNVQIVNKDHVEEADREDLGFMIRSGIVVVVKGAVIPDNTVI 430          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGC_SYNY3 (Glucose-1-phosphate adenylyltransferase OS=Synechocystis sp. (strain PCC 6803) GN=glgC PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 4.006e-16
Identity = 41/76 (53.95%), Postives = 56/76 (73.68%), Query Frame = 3
Query:   15 ADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            ++R  L A+G +  GIG  + I+RAIIDKNARIG NV IVN ++VQEA RE  G++I++GIV +IK+  I  GT+I
Sbjct:  364 SERDTLKARGEIAAGIGSGTTIRRAIIDKNARIGKNVMIVNKENVQEANREELGFYIRNGIVVVIKNVTIADGTVI 439          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGC_CYAP8 (Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain PCC 8801) GN=glgC PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.834e-16
Identity = 38/74 (51.35%), Postives = 56/74 (75.68%), Query Frame = 3
Query:   21 RRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            R   A +G +P+GIG+ S I+RAI+DKNARIG NV IVN +++ E+ +E  G++I++GIV I+K+A I  GT+I
Sbjct:  356 RESKAQEGKIPMGIGEGSTIRRAIVDKNARIGRNVTIVNKENIDESNQEESGFYIRNGIVVILKNATIADGTVI 429          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGL1_WHEAT (Glucose-1-phosphate adenylyltransferase large subunit (Fragment) OS=Triticum aestivum GN=AGA.1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.166e-15
Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = 3
Query:   12 DADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            D +R    A+G VPIGIG+N+ I+  IIDKNARIG NV I N++ VQEA R ++G+ I+SGI  ++K+++I  G +I
Sbjct:  225 DMERGDQLAEGKVPIGIGENTSIQNCIIDKNARIGKNVTIANAEGVQEADRASEGFHIRSGITVVLKNSVIADGLVI 301          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGL3_ARATH (Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic OS=Arabidopsis thaliana GN=APL3 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.522e-15
Identity = 37/71 (52.11%), Postives = 55/71 (77.46%), Query Frame = 3
Query:   30 LAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            L A+G+VPIGIG+++ I++ IIDKNA+IG NV I+N D V+EA R  +G++I+SGI  +++ A I  GT+I
Sbjct:  451 LLAEGNVPIGIGRDTKIRKCIIDKNAKIGKNVVIMNKDDVKEADRPEEGFYIRSGITVVVEKATIKDGTVI 521          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGL4_ARATH (Probable glucose-1-phosphate adenylyltransferase large subunit, chloroplastic OS=Arabidopsis thaliana GN=At2g21590 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.988e-15
Identity = 39/71 (54.93%), Postives = 53/71 (74.65%), Query Frame = 3
Query:   30 LAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            L A+G VPIGIGK++ I++ IIDKNA+IG NV I+N   VQEA R  +G++I+SGI  I++ A I  GT+I
Sbjct:  453 LLAEGKVPIGIGKDTKIRKCIIDKNAKIGKNVIIMNKGDVQEADRPEEGFYIRSGITVIVEKATIQDGTVI 523          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGL1_MAIZE (Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic/amyloplastic OS=Zea mays GN=SH2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.597e-15
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 3
Query:    3 TRPDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            T  +A +  LA  G VP+GIG+N+ I+  IID NARIG NV I NS  +QEA    +GY+I+SGIV I+K+A I  G++I
Sbjct:  439 TEEEASKLLLA--GKVPVGIGRNTKIRNCIIDMNARIGKNVVITNSKGIQEADHPEEGYYIRSGIVVILKNATINDGSVI 516          
The following BLAST results are available for this feature:
BLAST of EY756417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
GLGL1_ARATH4.732e-1751.95Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_SOLTU6.181e-1756.34Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGC_SYNP68.072e-1759.42Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]
GLGC_SYNE78.072e-1759.42Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]
GLGC_SYNY34.006e-1653.95Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]
GLGC_CYAP86.834e-1651.35Glucose-1-phosphate adenylyltransferase OS=Cyanoth... [more]
GLGL1_WHEAT1.166e-1550.65Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL3_ARATH1.522e-1552.11Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL4_ARATH1.988e-1554.93Probable glucose-1-phosphate adenylyltransferase l... [more]
GLGL1_MAIZE2.597e-1551.25Glucose-1-phosphate adenylyltransferase large subu... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-008-D04-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756417 ID=EY756417; Name=EY756417; organism=Citrus sinensis; type=EST; length=490bp
CCACGCGTCCGGATGCGGACAGGAGGTTTTTGGCTGCAAAGGGTAGTGTT
CCAATTGGTATTGGCAAGAATTCTCACATCAAGAGAGCAATAATCGACAA
AAATGCTCGAATTGGGGATAATGTGAAGATCGTCAACAGTGACAGTGTGC
AAGAAGCAGCAAGGGAAACAGATGGATACTTCATCAAGAGCGGGATTGTC
ACAATAATCAAGGATGCCTTGATTCCCAGTGGAACCATAATCTAAACTGT
CGTCTTCTCTTCTCAGTTTCATCCCAAGCTACGGGCACCTTCCCCTCTAC
GCTCGAGAATGTCGTAATATCGAGTCTGCTTCCACTTTACCTTTGGCCAT
CTTTTTGCTATAAGCTGTATATTTCCGGGCGGTGTAATGTTAATTATGAG
AGGAAAATAGGACCTGGAAAAGGGACATGCTGTAAAGGTCTAGTTATGCA
GAAATAAAATCTTTCATTCTATTCTAAAAAAAAAAAAAAA
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