EY756417

Overview
NameEY756417
Unique NameEY756417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5044 contig Csv1_Contig5044:1392..1881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGL1_BETVU (Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Beta vulgaris GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.597e-15
Identity = 37/71 (52.11%), Postives = 53/71 (74.65%), Query Frame = 3
Query:   30 LAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            L A+G VP+G+G+N+ IK  IIDKNA+IG +V I N+D V+EA R  +G++I+SGI  I+K+A I  G +I
Sbjct:  452 LLAEGKVPVGVGQNTKIKNCIIDKNAKIGKDVVIANTDGVEEADRPNEGFYIRSGITIILKNATIQDGLVI 522          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGL2_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.429e-15
Identity = 37/71 (52.11%), Postives = 53/71 (74.65%), Query Frame = 3
Query:   30 LAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            L A+G VPIG+G N+ I+  IIDKNA+IG +V I+N + V+EA R  +G++I+SGI  I+K+A I  GT+I
Sbjct:  449 LLAEGKVPIGVGPNTKIQNCIIDKNAKIGKDVVILNKEGVEEADRSAEGFYIRSGITVIMKNATIKDGTVI 519          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGL3_WHEAT (Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic (Fragment) OS=Triticum aestivum GN=AGA.7 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.683e-14
Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 3
Query:   30 LAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            L ++G VPIG+G+N+ I   IID NARIG +V I N + VQEA R  +GY+I+SGIV I K+A I  GT++
Sbjct:  430 LMSEGKVPIGVGENTKISNCIIDMNARIGRDVVISNKEGVQEADRPEEGYYIRSGIVVIQKNATIKDGTVV 500          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGL2_WHEAT (Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-L PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.683e-14
Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 3
Query:   30 LAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            L ++G VPIG+G+N+ I   IID NARIG +V I N + VQEA R  +GY+I+SGIV I K+A I  GT++
Sbjct:  452 LMSEGKVPIGVGENTKISNCIIDMNARIGRDVVISNKEGVQEADRPEEGYYIRSGIVVIQKNATIKDGTVV 522          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGL1_HORVU (Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.683e-14
Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 3
Query:   30 LAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            L ++G VPIG+G+N+ I   IID NARIG +V I N + VQEA R  +GY+I+SGIV I K+A I  GT++
Sbjct:  453 LMSEGKVPIGVGENTKISNCIIDMNARIGRDVVISNKEGVQEADRPEEGYYIRSGIVVIQKNATIKDGTVV 523          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGL2_ARATH (Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic OS=Arabidopsis thaliana GN=APL2 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 2.871e-14
Identity = 36/74 (48.65%), Postives = 52/74 (70.27%), Query Frame = 3
Query:   12 DADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSG 233
            +A+   L A+G VP+G+G+N+ IK  IIDKNA+IG NV I N+D V+E  R  +G+ I+SGI  ++K+A I  G
Sbjct:  442 EAEIASLLAEGKVPVGVGQNTKIKNCIIDKNAKIGKNVVIANADGVEEGDRPEEGFHIRSGITVVLKNATIRDG 515          
The following BLAST results are available for this feature:
BLAST of EY756417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
GLGL1_BETVU2.597e-1552.11Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_SOLTU4.429e-1552.11Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL3_WHEAT1.683e-1453.52Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_WHEAT1.683e-1453.52Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_HORVU1.683e-1453.52Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_ARATH2.871e-1448.65Glucose-1-phosphate adenylyltransferase large subu... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-008-D04-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756417 ID=EY756417; Name=EY756417; organism=Citrus sinensis; type=EST; length=490bp
CCACGCGTCCGGATGCGGACAGGAGGTTTTTGGCTGCAAAGGGTAGTGTT
CCAATTGGTATTGGCAAGAATTCTCACATCAAGAGAGCAATAATCGACAA
AAATGCTCGAATTGGGGATAATGTGAAGATCGTCAACAGTGACAGTGTGC
AAGAAGCAGCAAGGGAAACAGATGGATACTTCATCAAGAGCGGGATTGTC
ACAATAATCAAGGATGCCTTGATTCCCAGTGGAACCATAATCTAAACTGT
CGTCTTCTCTTCTCAGTTTCATCCCAAGCTACGGGCACCTTCCCCTCTAC
GCTCGAGAATGTCGTAATATCGAGTCTGCTTCCACTTTACCTTTGGCCAT
CTTTTTGCTATAAGCTGTATATTTCCGGGCGGTGTAATGTTAATTATGAG
AGGAAAATAGGACCTGGAAAAGGGACATGCTGTAAAGGTCTAGTTATGCA
GAAATAAAATCTTTCATTCTATTCTAAAAAAAAAAAAAAA
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