EY756409

Overview
NameEY756409
Unique NameEY756409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length911
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756409 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 194.126 bits (492), Expect = 9.207e-49
Identity = 101/181 (55.80%), Postives = 128/181 (70.72%), Query Frame = 2
Query:   11 ELLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKI 547
            +LLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+    T   AE   +KI
Sbjct:   13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKI 192          
BLAST of EY756409 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 194.126 bits (492), Expect = 9.207e-49
Identity = 101/181 (55.80%), Postives = 128/181 (70.72%), Query Frame = 2
Query:   11 ELLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKI 547
            +LLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+    T   AE   +KI
Sbjct:   13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKI 192          
BLAST of EY756409 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 194.126 bits (492), Expect = 9.207e-49
Identity = 101/181 (55.80%), Postives = 128/181 (70.72%), Query Frame = 2
Query:   11 ELLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKI 547
            +LLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+    T   AE   +KI
Sbjct:   13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKI 192          
BLAST of EY756409 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 194.126 bits (492), Expect = 9.207e-49
Identity = 101/181 (55.80%), Postives = 128/181 (70.72%), Query Frame = 2
Query:   11 ELLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKI 547
            +LLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+    T   AE   +KI
Sbjct:   13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKI 192          
BLAST of EY756409 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.051e-48
Identity = 97/167 (58.08%), Postives = 122/167 (73.05%), Query Frame = 2
Query:   11 ELLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD 511
            +LLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++A +NVNK+LVGNK+D+  +KR V T   +  A+  GI+F ETSAK   NVE+ F  +A  IK+R+A+
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDL-TAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMAN 175          
BLAST of EY756409 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.679e-48
Identity = 99/181 (54.70%), Postives = 127/181 (70.17%), Query Frame = 2
Query:   11 ELLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKI 547
            +LLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+    T   +E   + I
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSGGSEKSNVNI 189          
BLAST of EY756409 vs. ExPASy Swiss-Prot
Match: RAB10_RAT (Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.499e-48
Identity = 93/173 (53.76%), Postives = 124/173 (71.68%), Query Frame = 2
Query:   11 ELLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAE 529
            +LLLIGDSGVGK+C+L R                  KI+T+EL GK+IKLQIWDTAGQERF TITT+YYRGAMGI+LVYD+T+  SF NI  W+RNI+QHA+++V ++L+ NK DMD  KR VP  KG+ +A E+ I+FFETSAK N+N+E+ F ++  DI ++    +  +E
Sbjct:   11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIEIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDQHANEDVERMLLRNKCDMDH-KRVVPKGKGEQIAREHRIRFFETSAKANINIEKAFLTLPEDILRKTPVKEPNSE 182          
BLAST of EY756409 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.268e-47
Identity = 98/181 (54.14%), Postives = 128/181 (70.72%), Query Frame = 2
Query:   11 ELLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA-DTDSRAEPQTIKIN 550
            +LLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LVGNK+D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+     S  E   +KI+
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKID 189          
BLAST of EY756409 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.268e-47
Identity = 98/181 (54.14%), Postives = 128/181 (70.72%), Query Frame = 2
Query:   11 ELLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA-DTDSRAEPQTIKIN 550
            +LLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LVGNK+D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+     S  E   +KI+
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKID 189          
BLAST of EY756409 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.268e-47
Identity = 98/181 (54.14%), Postives = 128/181 (70.72%), Query Frame = 2
Query:   11 ELLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA-DTDSRAEPQTIKIN 550
            +LLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LVGNK+D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+     S  E   +KI+
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKID 189          
The following BLAST results are available for this feature:
BLAST of EY756409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1A_PIG9.207e-4955.80Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
RAB1A_MOUSE9.207e-4955.80Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN9.207e-4955.80Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA9.207e-4955.80Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]
YPT1_PHYIN2.051e-4858.08Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RAB1_DISOM2.679e-4854.70Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RAB10_RAT3.499e-4853.76Ras-related protein Rab-10 OS=Rattus norvegicus GN... [more]
RAB1B_PONAB2.268e-4754.14Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1... [more]
RAB1B_HUMAN2.268e-4754.14Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]
RAB1B_BOVIN2.268e-4754.14Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-008-C08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756409 ID=EY756409; Name=EY756409; organism=Citrus sinensis; type=EST; length=911bp
CCACGCGTCCGAGCTGCTCCTGATCGGCGACAGCGGTGTTGGTAAGAGTT
GTCTCCTTCTGCGATTCTCTGATGGTTCCTTTACTACCAGTTTTATTACA
ACCATTGGTATTGACTTCAAGATTAGGACCATAGAGCTTGATGGAAAACG
AATTAAACTTCAAATATGGGATACTGCAGGTCAAGAGAGGTTTCGAACAA
TTACAACCGCATACTACCGAGGAGCCATGGGAATATTGCTCGTATATGAT
GTCACCGACGAGTCATCTTTCAACAACATTAGGAATTGGATCCGTAATAT
CGAACAGCATGCATCTGACAATGTAAACAAGATTCTGGTGGGTAACAAGG
CCGACATGGACGAAAGCAAAAGGGCTGTCCCCACTTCAAAGGGCCAAGCT
CTTGCTGATGAATATGGCATCAAGTTCTTTGAGACTAGTGCAAAGACAAA
CCTAAATGTGGAGGAGGTTTTCTTTTCAATTGCAAGGGACATCAAGCAAA
GGCTTGCAGATACAGACTCTAGGGCTGAGCCTCAGACTATCAAAATTAAC
CAACCTGACCAGGCAGGTGGGGCTGCTCAAGCTGCCCAAAGATCAGCTTG
CTGCGGTTCTTAAGCAATCTATGAGGGTGAGATCACATGGGTATATGTCA
AGGGCATCATTTTGGTTGGGACGACTAATTTTGTCAACTATATCATTGGN
GGGCTGGATGGTTCTATCNATATTTTACAACTACCACACGCTTTGCTGTG
AATGATAGATCATCTGGGTTTGGCATTAATTATATATATTAAGTCCTTTC
ANTTTCTTTGTCCTTGGGCTGAAAAACATGGAATGCCTGTTATTTGCTTT
TTCGAACTGAAAATTAATAGAGCANGCTTCCTTCTCTGAAAAAAAAAAAA
AAAAAAAAAAA
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