EY756387

Overview
NameEY756387
Unique NameEY756387
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756387_ssr17 microsatellite EY756387_ssr17:17..36. BLAST: Citrus ESTs to Prunus persica proteins V1
EY756387_ssr73 microsatellite EY756387_ssr73:73..84. BLAST: Citrus ESTs to Prunus persica proteins V1
EY756387_ssr131 microsatellite EY756387_ssr131:131..142. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2239 contig Csv1_Contig2239:17..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2AZ_PONAB (Histone H2A.Z OS=Pongo abelii GN=H2AFZ PE=2 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 5.363e-38
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 3 
Query:  255 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 578
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2AZ_ONCMY (Histone H2A.Z OS=Oncorhynchus mykiss GN=h2afz PE=1 SV=4)

HSP 1 Score: 157.918 bits (398), Expect = 5.363e-38
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 3 
Query:  255 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 578
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2AZ_MOUSE (Histone H2A.Z OS=Mus musculus GN=H2afz PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 5.363e-38
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 3 
Query:  255 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 578
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2AZ_HUMAN (Histone H2A.Z OS=Homo sapiens GN=H2AFZ PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 5.363e-38
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 3 
Query:  255 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 578
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2AZ_CHICK (Histone H2A.Z OS=Gallus gallus GN=H2AFZ PE=1 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 5.363e-38
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 3 
Query:  255 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 578
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2AZ_BOVIN (Histone H2A.Z OS=Bos taurus GN=H2AFZ PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 5.363e-38
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 3 
Query:  255 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 578
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2AV_STRPU (Histone H2A.V (Fragment) OS=Strongylocentrotus purpuratus GN=H2A.F/Z PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.363e-38
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 3 
Query:  255 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 578
            VSRS+RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K   +
Sbjct:   15 VSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGSQ 122
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2AV_XENTR (Histone H2A.V OS=Xenopus tropicalis GN=h2afv PE=2 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 7.004e-38
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 3 
Query:  255 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 578
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2AV_XENLA (Histone H2A.V OS=Xenopus laevis GN=h2afv PE=2 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 7.004e-38
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 3 
Query:  255 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 578
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2AV_PAGMA (Histone H2A.V OS=Pagrus major GN=h2afv PE=2 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 7.004e-38
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 3 
Query:  255 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 578
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
The following BLAST results are available for this feature:
BLAST of EY756387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2AZ_PONAB5.363e-3875.93Histone H2A.Z OS=Pongo abelii GN=H2AFZ PE=2 SV=3[more]
H2AZ_ONCMY5.363e-3875.93Histone H2A.Z OS=Oncorhynchus mykiss GN=h2afz PE=1... [more]
H2AZ_MOUSE5.363e-3875.93Histone H2A.Z OS=Mus musculus GN=H2afz PE=1 SV=2[more]
H2AZ_HUMAN5.363e-3875.93Histone H2A.Z OS=Homo sapiens GN=H2AFZ PE=1 SV=2[more]
H2AZ_CHICK5.363e-3875.93Histone H2A.Z OS=Gallus gallus GN=H2AFZ PE=1 SV=3[more]
H2AZ_BOVIN5.363e-3875.93Histone H2A.Z OS=Bos taurus GN=H2AFZ PE=1 SV=2[more]
H2AV_STRPU5.363e-3875.93Histone H2A.V (Fragment) OS=Strongylocentrotus pur... [more]
H2AV_XENTR7.004e-3875.93Histone H2A.V OS=Xenopus tropicalis GN=h2afv PE=2 ... [more]
H2AV_XENLA7.004e-3875.93Histone H2A.V OS=Xenopus laevis GN=h2afv PE=2 SV=3[more]
H2AV_PAGMA7.004e-3875.93Histone H2A.V OS=Pagrus major GN=h2afv PE=2 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-008-A08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756387 ID=EY756387; Name=EY756387; organism=Citrus sinensis; type=EST; length=752bp
CCACGCGTCCGCTCGTTCTCTCTCTCTCTCTCTCTCACACACAAAAATCT
CAAACGCTCGCTTTGCTTTATCTCTTTCTTTCTTCTCCGATAATTTTCAT
CTCAGAAAAAATTAAAAATAATTAAATAAATAATTAATTAATTTAAAAGA
AGCTGTAGCAATTAGGCGGGAAAATGTCGGGCAAAGGAGCCAAAGGACTG
ATAACAGGCAAAACCACCATTAACAACAACAAGGATAAGGACAAGAAGAA
ACCCGTCTCCCGTTCTTCTCGTGCTGGTCTTCAGTTCCCAGTGGGAAGGG
TCCATCGTCTACTAAAGGAAAGGGCTGCTGCTCACGGAAGGGTTGGCGCA
ACAGCTGCTGTTTATACAGCAGCCATTTTGGAATATCTAACTGCCGAAGT
GTTGGAGTTGGCAGGGAATGCTAGCAAGGATTTGAAGGTCAAACGTATTA
CTCCAAGGCATTTGCAGCTTGCTATCCGAGGAGATGAAGAACTTGACACT
CTCATTAAAGGAACCATAGCCGGTGGAGGAGTTATTCCTCATATCCACAA
GTCCCTCATCAATAAATCCTCCAAAGAGTAGTTCGTGACACCGTCATCCT
CTCGGCTTTGTTTATGTGTGTACTTTTAGCTGTGCTGAAATATCTAAATG
AGAAATGATGCCAAAGATGTGTTAATGCTAGGAATCTGCATTTCTCATCC
TCATTTCTGCAGCGACGAATATGGTGCTTGTTTTTTCCCAAAAAAAAAAA
AG
back to top