EY756387

Overview
NameEY756387
Unique NameEY756387
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2A2_CANAL (Histone H2A.2 OS=Candida albicans GN=HTA2 PE=3 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 4.873e-23
Identity = 59/102 (57.84%), Postives = 74/102 (72.55%), Query Frame = 3 
Query:  258 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI 560
            SRS++AGL FPVGRVHRLL++              Y  ++LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH+SL+
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPV-YLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNIHQSLL 117
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2A1_SCHPO (Histone H2A-alpha OS=Schizosaccharomyces pombe GN=hta1 PE=1 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 4.873e-23
Identity = 61/106 (57.55%), Postives = 76/106 (71.70%), Query Frame = 3 
Query:  258 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 572
            SRS++AGL FPVGRVHRLL++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+I+  L+ K+S
Sbjct:   18 SRSAKAGLAFPVGRVHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKTS 122
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2AX_TETTH (Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 6.364e-23
Identity = 62/109 (56.88%), Postives = 74/109 (67.89%), Query Frame = 3 
Query:  255 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 578
            VSRS+RAGLQFPVGR+ R LK               Y AA+LEYL AEVLELAGNA+KD K  RI PRH+ LAIR DEEL+ L+   TIA GGV+P+I+  L+   SK+
Sbjct:   20 VSRSARAGLQFPVGRISRFLKHGRYSERVGTGAPV-YLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKSKK 127
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2AX_TETPY (Histone H2A.X OS=Tetrahymena pyriformis GN=HTA1 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 6.364e-23
Identity = 62/109 (56.88%), Postives = 74/109 (67.89%), Query Frame = 3 
Query:  255 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 578
            VSRS+RAGLQFPVGR+ R LK               Y AA+LEYL AEVLELAGNA+KD K  RI PRH+ LAIR DEEL+ L+   TIA GGV+P+I+  L+   SK+
Sbjct:   20 VSRSARAGLQFPVGRISRFLKHGRYSERIGTGAPV-YLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKSKK 127
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2A7_WHEAT (Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 6.364e-23
Identity = 60/107 (56.07%), Postives = 73/107 (68.22%), Query Frame = 3 
Query:  255 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 572
            +SRSS+AGLQFPVGR+ R LK               Y AA+LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH  L+ K +
Sbjct:   17 ISRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGMVTIASGGVMPNIHNLLLPKKA 122
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2A2_SCHPO (Histone H2A-beta OS=Schizosaccharomyces pombe GN=hta2 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 6.364e-23
Identity = 61/106 (57.55%), Postives = 75/106 (70.75%), Query Frame = 3 
Query:  258 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 572
            SRS++AGL FPVGRVHRLL++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+I+  L+ K S
Sbjct:   18 SRSAKAGLAFPVGRVHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKQS 122
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2A2_PICST (Histone H2A.2 OS=Pichia stipitis GN=HTA2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.364e-23
Identity = 59/102 (57.84%), Postives = 74/102 (72.55%), Query Frame = 3 
Query:  258 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLI 560
            SRS++AGL FPVGRVHRLL++              Y  ++LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH+SL+
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQRVGSGAPV-YLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQSLL 117
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2A2_DEBHA (Histone H2A.2 OS=Debaryomyces hansenii GN=HTA2 PE=3 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 6.364e-23
Identity = 59/102 (57.84%), Postives = 74/102 (72.55%), Query Frame = 3 
Query:  258 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLI 560
            SRS++AGL FPVGRVHRLL++              Y  ++LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH+SL+
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQRVGSGAPV-YLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQSLL 117
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2A1_LODEL (Histone H2A.1 OS=Lodderomyces elongisporus GN=HTA1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.364e-23
Identity = 59/102 (57.84%), Postives = 74/102 (72.55%), Query Frame = 3 
Query:  258 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLI 560
            SRS++AGL FPVGRVHRLL++              Y  ++LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH+SL+
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPV-YLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQSLL 117
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSJ (Probable histone H2A.6 OS=Oryza sativa subsp. japonica GN=Os05g0113900 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 8.312e-23
Identity = 62/110 (56.36%), Postives = 75/110 (68.18%), Query Frame = 3 
Query:  252 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 578
            PVSRS +AGLQFPVGR+ R LK+              Y AA+LEYL AEVLELAGNA++D K  RI PRH+ LAIR DEEL  L+ G TIA GGV+P+I+  L+ K + E
Sbjct:   25 PVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPV-YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 133
The following BLAST results are available for this feature:
BLAST of EY756387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2A2_CANAL4.873e-2357.84Histone H2A.2 OS=Candida albicans GN=HTA2 PE=3 SV=... [more]
H2A1_SCHPO4.873e-2357.55Histone H2A-alpha OS=Schizosaccharomyces pombe GN=... [more]
H2AX_TETTH6.364e-2356.88Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 P... [more]
H2AX_TETPY6.364e-2356.88Histone H2A.X OS=Tetrahymena pyriformis GN=HTA1 PE... [more]
H2A7_WHEAT6.364e-2356.07Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 S... [more]
H2A2_SCHPO6.364e-2357.55Histone H2A-beta OS=Schizosaccharomyces pombe GN=h... [more]
H2A2_PICST6.364e-2357.84Histone H2A.2 OS=Pichia stipitis GN=HTA2 PE=3 SV=1[more]
H2A2_DEBHA6.364e-2357.84Histone H2A.2 OS=Debaryomyces hansenii GN=HTA2 PE=... [more]
H2A1_LODEL6.364e-2357.84Histone H2A.1 OS=Lodderomyces elongisporus GN=HTA1... [more]
H2A6_ORYSJ8.312e-2356.36Probable histone H2A.6 OS=Oryza sativa subsp. japo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-008-A08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756387 ID=EY756387; Name=EY756387; organism=Citrus sinensis; type=EST; length=752bp
CCACGCGTCCGCTCGTTCTCTCTCTCTCTCTCTCTCACACACAAAAATCT
CAAACGCTCGCTTTGCTTTATCTCTTTCTTTCTTCTCCGATAATTTTCAT
CTCAGAAAAAATTAAAAATAATTAAATAAATAATTAATTAATTTAAAAGA
AGCTGTAGCAATTAGGCGGGAAAATGTCGGGCAAAGGAGCCAAAGGACTG
ATAACAGGCAAAACCACCATTAACAACAACAAGGATAAGGACAAGAAGAA
ACCCGTCTCCCGTTCTTCTCGTGCTGGTCTTCAGTTCCCAGTGGGAAGGG
TCCATCGTCTACTAAAGGAAAGGGCTGCTGCTCACGGAAGGGTTGGCGCA
ACAGCTGCTGTTTATACAGCAGCCATTTTGGAATATCTAACTGCCGAAGT
GTTGGAGTTGGCAGGGAATGCTAGCAAGGATTTGAAGGTCAAACGTATTA
CTCCAAGGCATTTGCAGCTTGCTATCCGAGGAGATGAAGAACTTGACACT
CTCATTAAAGGAACCATAGCCGGTGGAGGAGTTATTCCTCATATCCACAA
GTCCCTCATCAATAAATCCTCCAAAGAGTAGTTCGTGACACCGTCATCCT
CTCGGCTTTGTTTATGTGTGTACTTTTAGCTGTGCTGAAATATCTAAATG
AGAAATGATGCCAAAGATGTGTTAATGCTAGGAATCTGCATTTCTCATCC
TCATTTCTGCAGCGACGAATATGGTGCTTGTTTTTTCCCAAAAAAAAAAA
AG
back to top