EY756387 | Citrus Genome Database

Overview


Name	EY756387
Unique Name	EY756387
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	752

Libraries


Library Name	Type
Sweet orange leaf, field plant B	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
EY756387_ssr17	microsatellite	EY756387_ssr17:17..36.	BLAST: Citrus ESTs to Prunus persica proteins V1
EY756387_ssr73	microsatellite	EY756387_ssr73:73..84.	BLAST: Citrus ESTs to Prunus persica proteins V1
EY756387_ssr131	microsatellite	EY756387_ssr131:131..142.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2239	contig	Csv1_Contig2239:17..768.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2AZ_YEAST (Histone H2A.Z OS=Saccharomyces cerevisiae GN=HTZ1 PE=1 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 9.796e-32
Identity = 70/107 (65.42%), Postives = 82/107 (76.64%), Query Frame = 3

Query:  258 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 578
            S S+RAGLQFPVGR+ R LK               Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGD+ELD+LI+ TIA GGV+PHI+K+L+ K  K+
Sbjct:   24 SSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIRATIASGGVLPHINKALLLKVEKK 130

[Close]

BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2AZ_NEUCR (Histone H2A.Z OS=Neurospora crassa GN=htz-1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.671e-31
Identity = 70/103 (67.96%), Postives = 80/103 (77.67%), Query Frame = 3

Query:  258 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 566
            S S+RAGLQFP GRV R LK+              Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+PHI+++L+ K
Sbjct:   29 SHSARAGLQFPCGRVKRFLKQNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAFGGVLPHINRALLLK 131

[Close]

BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2AZ_MAGGR (Histone H2A.Z OS=Magnaporthe grisea GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.671e-31
Identity = 70/103 (67.96%), Postives = 80/103 (77.67%), Query Frame = 3

Query:  258 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 566
            S S+RAGLQFP GRV R LK+              Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+PHI+++L+ K
Sbjct:   28 SHSARAGLQFPCGRVKRFLKQNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAFGGVLPHINRALLLK 130

[Close]

BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2AZ_GIBZE (Histone H2A.Z OS=Gibberella zeae GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.671e-31
Identity = 70/103 (67.96%), Postives = 80/103 (77.67%), Query Frame = 3

Query:  258 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 566
            S S+RAGLQFP GRV R LK+              Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+PHI+++L+ K
Sbjct:   30 SHSARAGLQFPCGRVKRFLKQNTQQKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAYGGVLPHINRALLLK 132

[Close]

BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2AZ_CHAGB (Histone H2A.Z OS=Chaetomium globosum GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.671e-31
Identity = 70/103 (67.96%), Postives = 80/103 (77.67%), Query Frame = 3

Query:  258 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 566
            S S+RAGLQFP GRV R LK+              Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+PHI+++L+ K
Sbjct:   29 SHSARAGLQFPCGRVKRFLKQNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAFGGVLPHINRALLLK 131

[Close]

BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2AZ_NEOFI (Histone H2A.Z OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=htz1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.375e-30
Identity = 68/103 (66.02%), Postives = 78/103 (75.73%), Query Frame = 3

Query:  258 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 566
            S S++AGLQFP GRV R LK               Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+P I+++L+ K
Sbjct:   25 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAFGGVLPRINRALLLK 127

[Close]

BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2AZ_MONAN (Histone H2A.Z OS=Monascus anka GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.375e-30
Identity = 68/103 (66.02%), Postives = 78/103 (75.73%), Query Frame = 3

Query:  258 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 566
            S S++AGLQFP GRV R LK               Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+P I+++L+ K
Sbjct:   24 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAFGGVLPRINRALLLK 126

[Close]

BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2AZ_EMENI (Histone H2A.Z OS=Emericella nidulans GN=htz1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.375e-30
Identity = 68/103 (66.02%), Postives = 78/103 (75.73%), Query Frame = 3

Query:  258 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 566
            S S++AGLQFP GRV R LK               Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+P I+++L+ K
Sbjct:   25 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAFGGVLPRINRALLLK 127

[Close]

BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2AZ_ASPOR (Histone H2A.Z OS=Aspergillus oryzae GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.375e-30
Identity = 68/103 (66.02%), Postives = 78/103 (75.73%), Query Frame = 3

Query:  258 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 566
            S S++AGLQFP GRV R LK               Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+P I+++L+ K
Sbjct:   25 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAFGGVLPRINRALLLK 127

[Close]

BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2AZ_ASPNC (Histone H2A.Z OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.375e-30
Identity = 68/103 (66.02%), Postives = 78/103 (75.73%), Query Frame = 3

Query:  258 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 566
            S S++AGLQFP GRV R LK               Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+P I+++L+ K
Sbjct:   25 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAFGGVLPRINRALLLK 127

The following BLAST results are available for this feature:

BLAST of EY756387 vs. ExPASy Swiss-Prot

BLAST of EY756387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241


Match Name	E-value	Identity	Description
H2AZ_YEAST	9.796e-32	65.42	Histone H2A.Z OS=Saccharomyces cerevisiae GN=HTZ1 ...	[more]
H2AZ_NEUCR	1.671e-31	67.96	Histone H2A.Z OS=Neurospora crassa GN=htz-1 PE=3 S...	[more]
H2AZ_MAGGR	1.671e-31	67.96	Histone H2A.Z OS=Magnaporthe grisea GN=HTZ1 PE=3 S...	[more]
H2AZ_GIBZE	1.671e-31	67.96	Histone H2A.Z OS=Gibberella zeae GN=HTZ1 PE=3 SV=1	[more]
H2AZ_CHAGB	1.671e-31	67.96	Histone H2A.Z OS=Chaetomium globosum GN=HTZ1 PE=3 ...	[more]
H2AZ_NEOFI	5.375e-30	66.02	Histone H2A.Z OS=Neosartorya fischeri (strain ATCC...	[more]
H2AZ_MONAN	5.375e-30	66.02	Histone H2A.Z OS=Monascus anka GN=HTZ1 PE=3 SV=1	[more]
H2AZ_EMENI	5.375e-30	66.02	Histone H2A.Z OS=Emericella nidulans GN=htz1 PE=3 ...	[more]
H2AZ_ASPOR	5.375e-30	66.02	Histone H2A.Z OS=Aspergillus oryzae GN=HTZ1 PE=3 S...	[more]
H2AZ_ASPNC	5.375e-30	66.02	Histone H2A.Z OS=Aspergillus niger (strain CBS 513...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS13-C1-001-008-A08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY756387 ID=EY756387; Name=EY756387; organism=Citrus sinensis; type=EST; length=752bp
CCACGCGTCCGCTCGTTCTCTCTCTCTCTCTCTCTCACACACAAAAATCT
CAAACGCTCGCTTTGCTTTATCTCTTTCTTTCTTCTCCGATAATTTTCAT
CTCAGAAAAAATTAAAAATAATTAAATAAATAATTAATTAATTTAAAAGA
AGCTGTAGCAATTAGGCGGGAAAATGTCGGGCAAAGGAGCCAAAGGACTG
ATAACAGGCAAAACCACCATTAACAACAACAAGGATAAGGACAAGAAGAA
ACCCGTCTCCCGTTCTTCTCGTGCTGGTCTTCAGTTCCCAGTGGGAAGGG
TCCATCGTCTACTAAAGGAAAGGGCTGCTGCTCACGGAAGGGTTGGCGCA
ACAGCTGCTGTTTATACAGCAGCCATTTTGGAATATCTAACTGCCGAAGT
GTTGGAGTTGGCAGGGAATGCTAGCAAGGATTTGAAGGTCAAACGTATTA
CTCCAAGGCATTTGCAGCTTGCTATCCGAGGAGATGAAGAACTTGACACT
CTCATTAAAGGAACCATAGCCGGTGGAGGAGTTATTCCTCATATCCACAA
GTCCCTCATCAATAAATCCTCCAAAGAGTAGTTCGTGACACCGTCATCCT
CTCGGCTTTGTTTATGTGTGTACTTTTAGCTGTGCTGAAATATCTAAATG
AGAAATGATGCCAAAGATGTGTTAATGCTAGGAATCTGCATTTCTCATCC
TCATTTCTGCAGCGACGAATATGGTGCTTGTTTTTTCCCAAAAAAAAAAA
AG