EY756385

Overview
NameEY756385
Unique NameEY756385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length915
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756385_ssr53 microsatellite EY756385_ssr53:53..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY756385 vs. ExPASy Swiss-Prot
Match: GLT3_ARATH (Germin-like protein subfamily T member 3 OS=Arabidopsis thaliana GN=At1g74820 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.353e-22
Identity = 51/133 (38.35%), Postives = 83/133 (62.41%), Query Frame = 1
Query:  106 DFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSG 504
            DFCVADL+ + + +GYPC   + VT++DF +SGL    NT++    A  PA +  FP +N LG+S+  + +A GG    H+HP  +E  +V+ G +  GF++++  T+Y K +  GD+ + P GL+H++ N G
Sbjct:   42 DFCVADLQATPTNSGYPC--KSQVTSEDFFYSGLNTPLNTSNPKGIAANPANLLTFPGLNTLGISMYNVAIAPGGYNQPHSHPGVTEAGVVIEGSVLVGFLTTN-YTLYSKVIGPGDMFVIPPGLIHYEGNVG 171          
BLAST of EY756385 vs. ExPASy Swiss-Prot
Match: GL111_ORYSJ (Germin-like protein 11-1 OS=Oryza sativa subsp. japonica GN=Os11g0537300 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.160e-21
Identity = 52/136 (38.24%), Postives = 80/136 (58.82%), Query Frame = 1
Query:  148 GYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGL 555
            G+ C  P+ + A DF    L  AG+  +++ ++       +FP +N LG+S+AR D+A  G +  H+HP ASE++ V  G + AGF  +    ++ KTL +GD+ IFP+GL+HF +N G   A  F   NS NPG+
Sbjct:   46 GFFCKSPSTIMASDFKTLLLNHAGDLDNMVRSSANIITATEFPGLNTLGISMARTDIAVSGAVLPHSHPRASEMMFVHSGSVVAGFFDTKGK-LFQKTLAEGDVFIFPRGLVHFIMNYGFGLATTFSVLNSQNPGV 180          
BLAST of EY756385 vs. ExPASy Swiss-Prot
Match: GL92_ORYSJ (Putative germin-like protein 9-2 OS=Oryza sativa subsp. japonica GN=Os09g0568600 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.821e-21
Identity = 55/133 (41.35%), Postives = 79/133 (59.40%), Query Frame = 1
Query:  166 PAMVTADDFVFSGLGVAGNTTSIINA---AVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGL 555
            P  +T D F F+G     NT+S        VT A +A+FPA+NG  +S A L      V P HTHP ++E+LLVV G ++ GFI ++ N +Y + L  GD+ +FP+G++HFQ NSG   A+   +F S  PG+
Sbjct:   42 PMNITGDFFTFTGFRKVFNTSSAPEPNSFTVTKATMAEFPALNGQSVSYATLVFPPSTVNPPHTHPRSAELLLVVDGALSVGFIDTT-NKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAPGV 173          
BLAST of EY756385 vs. ExPASy Swiss-Prot
Match: GL31_ORYSJ (Germin-like protein 3-1 OS=Oryza sativa subsp. japonica GN=Os03g0179000 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.119e-20
Identity = 69/188 (36.70%), Postives = 95/188 (50.53%), Query Frame = 1
Query:  106 DFCVADLKLSDSPA-----GYPCVPPAMVTADDFVFSGLGVAGNTTSII---NAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVN-SGADGALGFVSFNSPNPGLQ-SPIS-----PYLPQLV----FPIGGAD 612
            D+CVAD   + +       G  C+ PA+  AD F  S L  A N  + +   NA +T    A  P  N  GL++AR+DLA GG+ P H+HP ASE  LV+ G +  GF  +S   +Y + L+ G+  +FP+ ++HF  N   A  A+     NS +PG Q  P S     P LP  V    F I G D
Sbjct:   29 DYCVADTAAATAAGAFHLNGLACIDPALARADHFATSALSRATNPAATLYGFNATLTSP-AASLPGANAQGLAMARIDLAPGGMAPPHSHPRASEAALVLSGSVLVGFADTSYR-LYTQLLRAGEAFVFPRAMVHFLYNMDTAAPAVVLSGLNSQSPGAQLVPFSAFRTEPRLPDEVLKKAFKITGQD 214          
BLAST of EY756385 vs. ExPASy Swiss-Prot
Match: GL91_ORYSJ (Germin-like protein 9-1 OS=Oryza sativa subsp. japonica GN=Os09g0568500 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.449e-19
Identity = 59/148 (39.86%), Postives = 82/148 (55.41%), Query Frame = 1
Query:  166 PAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSAN-TVYVKTLKKGDIMIFPQGLLHFQVNSGAD-GALGFVSFNSPNPGLQSPISPYLPQLVFPIG 603
            P+ +    F +  L V GN+       VT A  A+FPA+ G  +S A L    G V P H HP ASE+L+VV G +  G + ++ N TVY +TL+ GD+ +FP+G++HFQ N+G D  A  F +F S  PG  S     LP  +F  G
Sbjct:   42 PSGIDGAFFTYKNL-VTGNSGDPAKLTVTKATHAEFPALLGQSVSYAALVFGAGTVNPPHIHPRASELLVVVQGPLLVGLVDAARNGTVYTQTLQTGDMFVFPKGMVHFQFNNGTDVVARAFSAFGSATPGTIS-----LPAALFGSG 183          
BLAST of EY756385 vs. ExPASy Swiss-Prot
Match: GL11_ARATH (Germin-like protein subfamily 1 member 1 OS=Arabidopsis thaliana GN=GLP7 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 4.504e-19
Identity = 57/160 (35.62%), Postives = 81/160 (50.62%), Query Frame = 1
Query:  100 VNDFCVADLKLSDSPA---GYPCVPPAMVTADDFVFSGLGVAGNTTS---IINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVN-SGADGALGFVSFNSPNPGLQ 558
            + D+CV+    S       G  C  P   +  DF  S L   GNT +   +IN  VT    A  P +N +GL++ARLD    GV+P H HP ASE+ + + G +  GF+ +S   V+ + L  G+  +FP+GL+HF  N      AL     +S NPG Q
Sbjct:   23 LQDYCVSPPPSSHQQIFLNGKLCKDPTQASVSDFSTSALSRPGNTKTKPFMINVTVTTT--ANLPGLNTVGLTMARLDFGGSGVVPPHVHPRASEVTVCLDGVLLVGFVDTSGR-VFTQELHPGETFVFPKGLIHFLYNIDTVSSALAVSGLSSQNPGTQ 179          
BLAST of EY756385 vs. ExPASy Swiss-Prot
Match: GL93_ORYSJ (Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.495e-18
Identity = 52/137 (37.96%), Postives = 78/137 (56.93%), Query Frame = 1
Query:  175 VTADDFVFSGLGVAGNTTSI--------INAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQS 561
            +T D F F+G     N  S+         N  VT A +A+FPA+NG  +S A L      + P HTHP ++E+LL+V G ++ GF+ ++ N +Y + L  GD+ +FP+G++HFQ NSG   A+   +F S   GL S
Sbjct:   43 ITGDFFTFTGFR---NPLSMNMSMPMPNANFTVTKATMAEFPALNGQSVSYAVLMYPPATLNPPHTHPRSAELLLLVDGALSVGFVDTT-NKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAAGLVS 175          
BLAST of EY756385 vs. ExPASy Swiss-Prot
Match: SR1A_PHYPO (Spherulin-1A OS=Physarum polycephalum PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.897e-11
Identity = 41/130 (31.54%), Postives = 62/130 (47.69%), Query Frame = 1
Query:  187 DFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQSPISPY 576
            DF  S LGV   T               FPAV G  +++    +   G+   HTHP A+EI  +  G   AGF   +       TL+ G   +FPQG +HF++N   + A+   +FN+ +PG+Q+  S +
Sbjct:   75 DFKNSKLGVTQGT----GGKTVATSRTNFPAVIGHNVAMTVGFIEACGINLPHTHPRATEINFIASGKFEAGFFLENQAKFIGHTLEAGMATVFPQGAIHFEINMNCEPAMFVAAFNNEDPGVQTTASSF 200          
BLAST of EY756385 vs. ExPASy Swiss-Prot
Match: SR1B_PHYPO (Spherulin-1B OS=Physarum polycephalum PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.701e-11
Identity = 41/130 (31.54%), Postives = 63/130 (48.46%), Query Frame = 1
Query:  187 DFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQSPISPY 576
            DF  S LGV    T              FPAV G  +++    +   G+   HTHP A+EI  +  G   AGF   +  T     L++G   +FPQG +HF++N   + A+   +FN+ +PG+Q+  S +
Sbjct:   62 DFKNSKLGV----TQSAGGKTVATSRTDFPAVIGHNIAMTVGFIEACGINLPHTHPRATEINFIAKGRFQAGFFLENQATFIGHILEEGMATVFPQGAIHFEINLECEPAMFVAAFNNEDPGVQTTASSF 187          
The following BLAST results are available for this feature:
BLAST of EY756385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLT3_ARATH4.353e-2238.35Germin-like protein subfamily T member 3 OS=Arabid... [more]
GL111_ORYSJ2.160e-2138.24Germin-like protein 11-1 OS=Oryza sativa subsp. ja... [more]
GL92_ORYSJ2.821e-2141.35Putative germin-like protein 9-2 OS=Oryza sativa s... [more]
GL31_ORYSJ3.119e-2036.70Germin-like protein 3-1 OS=Oryza sativa subsp. jap... [more]
GL91_ORYSJ3.449e-1939.86Germin-like protein 9-1 OS=Oryza sativa subsp. jap... [more]
GL11_ARATH4.504e-1935.63Germin-like protein subfamily 1 member 1 OS=Arabid... [more]
GL93_ORYSJ8.495e-1837.96Germin-like protein 9-3 OS=Oryza sativa subsp. jap... [more]
SR1A_PHYPO5.897e-1131.54Spherulin-1A OS=Physarum polycephalum PE=1 SV=1[more]
SR1B_PHYPO7.701e-1131.54Spherulin-1B OS=Physarum polycephalum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-008-A06-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756385 ID=EY756385; Name=EY756385; organism=Citrus sinensis; type=EST; length=915bp
CCACGCGTCCGAAAATAACTACACTAAATATTAGTCAAAATGCTTCACAT
TCTCTTCTTCTTCTTCCTTGCTTTCGTATCCTCTTCCTCCAATGCTATGG
TTAACGACTTCTGCGTCGCTGACCTAAAGCTGTCGGATAGTCCCGCCGGC
TATCCTTGCGTGCCCCCTGCTATGGTTACCGCTGACGACTTCGTATTTTC
GGGCCTCGGCGTGGCCGGAAACACCACGAGTATTATCAACGCGGCAGTGA
CACCTGCATTTGTAGCTCAATTTCCGGCCGTGAATGGCCTCGGACTCTCC
TTGGCACGCCTAGATCTTGCAAAGGGTGGCGTAATCCCAATGCACACTCA
TCCAGCTGCTTCCGAAATCCTTCTTGTTGTGCATGGCTGCATAACTGCCG
GGTTCATTTCCTCTTCAGCTAACACTGTTTACGTAAAGACGCTTAAGAAG
GGAGATATCATGATCTTTCCACAAGGGTTGTTGCATTTTCAAGTAAATTC
CGGCGCGGACGGAGCCCTCGGTTTTGTTAGCTTCAACAGCCCGAATCCTG
GACTCCAATCACCGATTTCGCCTTATTTGCCACAACTTGTCTTCCCAATT
GGTGGAGCAGACCACTTTCCTTGACGATGCTACGGTGAAGAGGCTCAAGG
GTATCCTTGGTGGCACCGGCTAGGCTTATTAGTTACACATTCTTCATTTG
NNNAGTTTGAGTCTNAANNTTCATTTAGTGCTAATGGATTTNNGATGTGG
AATTCACGAGTAGTATTTTCTCTGGTCTCACTTCCCNTATCTTTCTCTGA
ATAATAAATTCTCTCATTAAAAAAAAAAAAAAGGCNGCCCGTCTAAAGAT
TCAAGTTTCGTACCGTGCATGCGAGTCATACTCTCTATAGGCACCTAATT
CATTACTGGCGCCGT
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