EY756378

Overview
NameEY756378
Unique NameEY756378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12605 contig Csv1_Contig12605:87..954. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756378 vs. ExPASy Swiss-Prot
Match: MDH_NITHX (Malate dehydrogenase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=mdh PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.049e-11
Identity = 58/216 (26.85%), Postives = 108/216 (50.00%), Query Frame = 1
Query:   73 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVHTAAGEKPVRELVK 717
            MA++ + ++    +GQIG  L  +I    +      V+  + +  P  ++L+  +   VD     L G     ++ EA  G  + ++  G PRK GM R D++S N+ + +   + ++++A P+  V+ + NP +     L++ A  +PAK +  +   LD +R    ++++ +V V DV    + G H  S  P V ++TV   AG  P+ +LVK
Sbjct:    1 MARDKIALI---GSGQIGGTLAHLIG---LKELGDVVMFDIAEGIPQGKSLDIAQSSPVDGFDAKLTGA----NSYEALEGARVCIVTAGIPRKPGMSRDDLLSINLKVMEQVGAGIKKYA-PDAFVICITNPLDAMVWALQK-ASGMPAKKVVGMAGVLDSSRFRYFLADEFDVSVEDV-TAFVLGGHGDSMVPLVKYSTV---AG-IPLPDLVK 199          
BLAST of EY756378 vs. ExPASy Swiss-Prot
Match: MDH_RHOSK (Malate dehydrogenase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=mdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 50/189 (26.46%), Postives = 91/189 (48.15%), Query Frame = 1
Query:  112 AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 675
            AGQIG  L  + A   +      V+  + +  P  +AL+  +    +    ++KG     ++ E   G ++ ++  G PRK GM R D++  N+ + K+    ++ HA PN  V+ + NP +     L++F+  +PA+ +  +   LD  R    +S + NV + DV    + G H  +  P V ++TV
Sbjct:   11 AGQIGGTLAHLAA---IKELGDVVLFDIAEGTPQGKALDIAQSGPSEGFDAVMKGA----NSYEEIAGADVCIVTAGVPRKPGMSRDDLIGINLKVMKSVGEGIKAHA-PNAFVICITNPLDAMVWALQQFS-GLPAEKVVGMAGVLDSARFRHFLSVEFNVSMRDV-TAFVLGGHGDTMVPLVRYSTV 189          
BLAST of EY756378 vs. ExPASy Swiss-Prot
Match: MDH_RHOS4 (Malate dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=mdh PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 50/189 (26.46%), Postives = 91/189 (48.15%), Query Frame = 1
Query:  112 AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 675
            AGQIG  L  + A   +      V+  + +  P  +AL+  +    +    ++KG     ++ E   G ++ ++  G PRK GM R D++  N+ + K+    ++ HA PN  V+ + NP +     L++F+  +PA+ +  +   LD  R    +S + NV + DV    + G H  +  P V ++TV
Sbjct:   11 AGQIGGTLAHLAA---IKELGDVVLFDIAEGTPQGKALDIAQSGPSEGFDAVMKGA----NSYEEIAGADVCIVTAGVPRKPGMSRDDLIGINLKVMKSVGEGIKAHA-PNAFVICITNPLDAMVWALQQFS-GLPAEKVVGMAGVLDSARFRHFLSVEFNVSMRDV-TAFVLGGHGDTMVPLVRYSTV 189          
BLAST of EY756378 vs. ExPASy Swiss-Prot
Match: MDH_RHOS1 (Malate dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=mdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 50/189 (26.46%), Postives = 91/189 (48.15%), Query Frame = 1
Query:  112 AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 675
            AGQIG  L  + A   +      V+  + +  P  +AL+  +    +    ++KG     ++ E   G ++ ++  G PRK GM R D++  N+ + K+    ++ HA PN  V+ + NP +     L++F+  +PA+ +  +   LD  R    +S + NV + DV    + G H  +  P V ++TV
Sbjct:   11 AGQIGGTLAHLAA---IKELGDVVLFDIAEGTPQGKALDIAQSGPSEGFDAVMKGA----NSYEEIAGADVCIVTAGVPRKPGMSRDDLIGINLKVMKSVGEGIKAHA-PNAFVICITNPLDAMVWALQQFS-GLPAEKVVGMAGVLDSARFRHFLSVEFNVSMRDV-TAFVLGGHGDTMVPLVRYSTV 189          
The following BLAST results are available for this feature:
BLAST of EY756378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
MDH_NITHX7.049e-1126.85Malate dehydrogenase OS=Nitrobacter hamburgensis (... [more]
MDH_RHOSK9.206e-1126.46Malate dehydrogenase OS=Rhodobacter sphaeroides (s... [more]
MDH_RHOS49.206e-1126.46Malate dehydrogenase OS=Rhodobacter sphaeroides (s... [more]
MDH_RHOS19.206e-1126.46Malate dehydrogenase OS=Rhodobacter sphaeroides (s... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-H10-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756378 ID=EY756378; Name=EY756378; organism=Citrus sinensis; type=EST; length=867bp
CCACGCGTCCGCTTCTCTCGCTTTACTGGAAAAATCTTTTCGTTTCCTGT
GATACATCTCTGATCCGAACTAATGGCCAAGGAACCAGTTCGCGTTCTCG
TCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGATTGCT
AGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATGCTTGA
TATCCCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTTGGTTG
ATGCTGCATTCCCTCTTCTTAAAGGTGTTGTTGCTACAACTGATGCTGTT
GAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTTCCAAG
AAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTCAATCT
ACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACTGCAAG
GTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTGAAAGA
ATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAGATTGG
ATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCCAAGTA
TCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCTCAGTA
CCCTGATGTCAACCATGCAACTGTNCATACTGCAGCTGGGGAAAAGCCTG
TCCGTGAGCTTGTCAAGGATGATGCATGGTTGAATGGAAATTCATAACAC
GNCCCAACAACGTGGTGCTGAATCATCAAAGCAGAAAGTCTCCAGGGCTC
TGCTGTGCTACTCTGCTGTGACATATTCCGGATTGGTTCTTGGACTCTGA
GGCACTTGGGCTCATGG
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