EY756378

Overview
NameEY756378
Unique NameEY756378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12605 contig Csv1_Contig12605:87..954. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756378 vs. ExPASy Swiss-Prot
Match: MDH_BORPA (Malate dehydrogenase OS=Bordetella parapertussis GN=mdh PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 9.079e-59
Identity = 132/270 (48.89%), Postives = 165/270 (61.11%), Query Frame = 1
Query:   73 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVHTAAGEKPVRELVKDDAWLNGNS*HXPTT---WC*IIKAESLQGSAVLLCCDIFRIGSWTLRHLGSW 867
            M+K  +RV VTGAAGQIGYAL+  IA G MLG DQPVIL +L+IP   A +AL GV MEL D AFPLL  V A +D   A    ++A++VG  PR  GMERKD++S N  I+ AQ  AL   A+ N KVLVV NPANTNA I  + AP +PAKN T + RLDHNRAL Q+S K   +V+D++ +I+WGNHS + YPD   ATV    G + + +L+ DDAW        PT       II+A  L  +A      I  +  W L   G W
Sbjct:    1 MSKPALRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVIMELEDCAFPLLHEVTAHSDPRTAFKDADVALLVGARPRGPGMERKDLLSVNAQIFTAQGRALNDVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALSQLSAKSGKRVADIEKLIVWGNHSPTMYPDFRFATV----GGQGLTQLINDDAW--NRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGSNGKW 264          
BLAST of EY756378 vs. ExPASy Swiss-Prot
Match: MDH_BORBR (Malate dehydrogenase OS=Bordetella bronchiseptica GN=mdh PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 9.079e-59
Identity = 132/270 (48.89%), Postives = 165/270 (61.11%), Query Frame = 1
Query:   73 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVHTAAGEKPVRELVKDDAWLNGNS*HXPTT---WC*IIKAESLQGSAVLLCCDIFRIGSWTLRHLGSW 867
            M+K  +RV VTGAAGQIGYAL+  IA G MLG DQPVIL +L+IP   A +AL GV MEL D AFPLL  V A +D   A    ++A++VG  PR  GMERKD++S N  I+ AQ  AL   A+ N KVLVV NPANTNA I  + AP +PAKN T + RLDHNRAL Q+S K   +V+D++ +I+WGNHS + YPD   ATV    G + + +L+ DDAW        PT       II+A  L  +A      I  +  W L   G W
Sbjct:    1 MSKPALRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVIMELEDCAFPLLHEVTAHSDPRTAFKDADVALLVGARPRGPGMERKDLLSVNAQIFTAQGRALNDVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALSQLSAKSGKRVADIEKLIVWGNHSPTMYPDFRFATV----GGQGLTQLINDDAW--NRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGSNGKW 264          
BLAST of EY756378 vs. ExPASy Swiss-Prot
Match: MDH_CUPTR (Malate dehydrogenase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=mdh PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.549e-58
Identity = 125/262 (47.71%), Postives = 162/262 (61.83%), Query Frame = 1
Query:   73 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVHTAAGEKPVRELVKDDAWLNGNS*HXPTT---WC*IIKAESLQGSAVLLCCDIFRIGSWTL 849
            MAK P+RV VTGAAGQIGY+L+  IA G MLG DQPVIL +LD+P A +A+ GV MEL D AFPLL GVV T D   A    ++A++VG  PR +GMERKD++  N  I+  Q  AL++ A+ N KVLVV NPANTNA I  + AP++P +N T + RLDHNRAL QI+ K    VS ++ + +WGNHS + Y D  +ATV      + V++L+ D  W   N    PT       II+A  L  +A      I  +  W L
Sbjct:    1 MAKAPMRVAVTGAAGQIGYSLLFRIANGDMLGKDQPVILQLLDLPQAQQAVKGVVMELEDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLEANAQIFTVQGKALDEVASRNVKVLVVGNPANTNAYIAMKSAPNLPRENFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYATV----DGQSVKDLINDPVW--NNDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVL 256          
BLAST of EY756378 vs. ExPASy Swiss-Prot
Match: MDH_RALEJ (Malate dehydrogenase OS=Ralstonia eutropha (strain JMP134) GN=mdh PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 2.023e-58
Identity = 125/262 (47.71%), Postives = 161/262 (61.45%), Query Frame = 1
Query:   73 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVHTAAGEKPVRELVKDDAWLNGNS*HXPTT---WC*IIKAESLQGSAVLLCCDIFRIGSWTL 849
            MAK P+RV VTGAAGQIGY+L+  IA G MLG DQPVIL +LD+P A  A+ GV MEL D AFPLL GVV T D   A    ++A++VG  PR +GMERKD++  N  I+  Q  AL++ A+ N KVLVV NPANTNA I  + APS+P +N T + RLDHNRAL QI+ K    V+ ++ + +WGNHS + Y D  +ATV      K V++++ D  W   N    PT       II+A  L  +A      I  +  W L
Sbjct:    1 MAKAPMRVAVTGAAGQIGYSLLFRIANGDMLGKDQPVILQLLDLPQAQAAVKGVVMELEDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLEANAQIFTVQGKALDEVASRNVKVLVVGNPANTNAYIAMKSAPSLPRENFTAMLRLDHNRALSQIAAKTGKPVASIEKMFVWGNHSPTMYADYRYATV----DGKSVKDMINDPVW--NNDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHVHDWVL 256          
BLAST of EY756378 vs. ExPASy Swiss-Prot
Match: MDH_NITEC (Malate dehydrogenase OS=Nitrosomonas eutropha (strain C91) GN=mdh PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 2.023e-58
Identity = 113/216 (52.31%), Postives = 154/216 (71.30%), Query Frame = 1
Query:   85 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVHTAAGEKPVRELVKDDAWL 732
            PVR+ VTGAAGQI Y+L+  IA G MLG++QPVIL +LDIP + + L+GV MEL D AFPLL G++AT D + A    +IA++VG  PR++GMERKD++  N  I++ Q   L Q A  + K+LVV NPANTN LI  + AP +PA+N + + RLDHNRAL Q++ KLN  VS++K +I+WGNHSS+Q+PD+ HA +    G+  V  L+KD  W+
Sbjct:    4 PVRITVTGAAGQISYSLLFRIAAGDMLGSNQPVILQLLDIPESRKILDGVVMELQDCAFPLLAGIIATHDPMMAFDQTDIAILVGARPRRKGMERKDLLQTNGEIFRNQGKILNQVAKRDAKILVVGNPANTNTLITMKNAPDLPAENFSGMLRLDHNRALSQVAMKLNQPVSNIKKMIVWGNHSSTQFPDLYHAEI----GDTKVINLIKDPIWI 215          
BLAST of EY756378 vs. ExPASy Swiss-Prot
Match: MDH_BORPD (Malate dehydrogenase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=mdh PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.642e-58
Identity = 130/270 (48.15%), Postives = 165/270 (61.11%), Query Frame = 1
Query:   73 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVHTAAGEKPVRELVKDDAWLNGNS*HXPTT---WC*IIKAESLQGSAVLLCCDIFRIGSWTLRHLGSW 867
            M+K  +RV VTGAAGQIGYAL+  IA G MLG DQPVIL +L+IP   A +AL GV MEL D AFPLL+ V A +D   A    ++A++VG  PR  GMERKD++S N  I+ AQ  AL   A+ N KVLVV NPANTNA I  + AP +PAKN T + RLDHNRAL Q++ K    V+D++ +++WGNHS + YPD   ATV    G + + +L+ DDAW        PT       II+A  L  +A      I  +  W L   G W
Sbjct:    1 MSKPAMRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVIMELDDCAFPLLQEVTAHSDPRTAFKDADVALLVGARPRGPGMERKDLLSVNAQIFTAQGKALNDVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALSQLAAKSGKAVADIEKLVVWGNHSPTMYPDYRFATV----GGQSLAKLINDDAW--NRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGSNGKW 264          
BLAST of EY756378 vs. ExPASy Swiss-Prot
Match: MDH_ALCBS (Malate dehydrogenase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=mdh PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.642e-58
Identity = 126/263 (47.91%), Postives = 165/263 (62.74%), Query Frame = 1
Query:   70 LMAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVHTAAGEKPVRELVKDDAWLNGNS*HXPTT---WC*IIKAESLQGSAVLLCCDIFRIGSWTL 849
            +  K PVRV VTGAAGQI Y+L+  IA G MLG DQPVIL +L+I PA EALNGV MEL D AFPL+ G+  T DA  A    + A++VG  PR  GMERKD++  N +I+ AQ  A+  +A+   KVLVV NPANTNALI +  AP I  +  T +TRLDHNRA+ Q++ KL   V+DVK ++IWGNHSS+QYPD++H  V    G+  + ++ +D  W   +  + PT       IIKA     +A      +  + SW L
Sbjct:    1 MFMKAPVRVAVTGAAGQISYSLLFRIASGDMLGKDQPVILQLLEITPALEALNGVIMELEDCAFPLVAGITGTDDANVAFKDADYALLVGARPRGPGMERKDLLEANAAIFSAQGKAINDNASKGIKVLVVGNPANTNALIAQRNAPDIDPRQFTAMTRLDHNRAMAQLANKLGKTVNDVKKMLIWGNHSSTQYPDLHHCEVD---GKVAIDQVEQD--WYEND--YIPTVQQRGAAIIKARGASSAASAANAAVDHMRSWAL 256          
BLAST of EY756378 vs. ExPASy Swiss-Prot
Match: MDH_PSYA2 (Malate dehydrogenase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=mdh PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.885e-58
Identity = 129/260 (49.62%), Postives = 164/260 (63.08%), Query Frame = 1
Query:   79 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVHTAAGEKPVRELVKDDAWLNGNS*HXPTT---WC*IIKAESLQGSAVLLCCDIFRIGSWTL 849
            K+PVRV VTGAAG I YA++  IA G MLG DQPVIL +L+I PA +AL GV MEL D AFPLL G+V T DA  A   V+ A++VG  PR  GMERKD++  N +I+ AQ  AL   A+ + KVLVV NPANTNALI +  AP +  +N T +TRLDHNRA+ Q++ K +  V+DVK +IIWGNHSS+QYPD+  +TV+     K   +LV D  W  G   + P        IIKA     +A      I  + +W L
Sbjct:    4 KQPVRVAVTGAAGNISYAMLFRIASGEMLGKDQPVILQLLEIAPALDALKGVVMELEDCAFPLLAGIVQTDDATVAFKDVDYALLVGSRPRGPGMERKDLLEANAAIFSAQGKALNDVASRDVKVLVVGNPANTNALIAQRNAPDLDPRNFTAMTRLDHNRAMAQLAGKTDSTVNDVKKMIIWGNHSSTQYPDLTASTVN----GKLALDLV-DRTWYEGT--YIPEVQQRGAAIIKARGASSAASAANAAIAHMRTWVL 256          
BLAST of EY756378 vs. ExPASy Swiss-Prot
Match: MDH_STRGG (Malate dehydrogenase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=mdh PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.686e-58
Identity = 115/220 (52.27%), Postives = 147/220 (66.82%), Query Frame = 1
Query:   73 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVHTAAGEKPVRELVKDDAWL 732
            M + PV V VTGAAGQIGYAL+  IA G +LG D PV L +L+IP   +A  G  MEL D AFPLL+G+  T D      G N+A++VG  PR +GMER D+++ N  I+K Q  A+  HAA + KVLVV NPANTNALI +  AP +PA+  T +TRLDHNRA+ Q++ K    VSD+K + IWGNHS++QYPD+ HA +   AG K   E V D+ WL
Sbjct:    1 MTRTPVNVTVTGAAGQIGYALLFRIASGHLLGPDVPVNLRLLEIPQGLKAAEGTAMELDDCAFPLLRGIEITDDPNVGFAGANVALLVGARPRTKGMERGDLLAANGGIFKPQGKAINDHAADDIKVLVVGNPANTNALIAQAAAPDVPAERFTAMTRLDHNRAISQLAAKTGAAVSDIKKLTIWGNHSATQYPDIFHAEI---AG-KNAAETVNDEVWL 216          
BLAST of EY756378 vs. ExPASy Swiss-Prot
Match: MDH_SACEN (Malate dehydrogenase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=mdh PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.686e-58
Identity = 115/220 (52.27%), Postives = 149/220 (67.73%), Query Frame = 1
Query:   73 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVHTAAGEKPVRELVKDDAWL 732
            M + PV V VTGAAGQIGYAL+  IA G ++G D PV L +L+IP A +A  G  MEL D AFPLL+G+  T DA  A  G N+A++VG  PR +GMER D++  N  I+K Q  A+   AA + +VLVV NPANTNALI +  AP +PA+  T +TRLDHNRAL Q+++KL V V+D+K + IWGNHS++QYPD+ HA V+     + V     D AWL
Sbjct:    1 MTQAPVTVTVTGAAGQIGYALLFRIASGQLIGPDTPVRLRLLEIPQAVKAAEGTAMELDDCAFPLLQGIEVTDDARTAFDGTNVALLVGARPRTKGMERGDLLEANGGIFKPQGEAINAGAADDVRVLVVGNPANTNALIAQAHAPDVPAERFTAMTRLDHNRALTQLAQKLGVSVNDIKKLTIWGNHSATQYPDLFHAEVNGKVAAEQV-----DQAWL 215          
The following BLAST results are available for this feature:
BLAST of EY756378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
MDH_BORPA9.079e-5948.89Malate dehydrogenase OS=Bordetella parapertussis G... [more]
MDH_BORBR9.079e-5948.89Malate dehydrogenase OS=Bordetella bronchiseptica ... [more]
MDH_CUPTR1.549e-5847.71Malate dehydrogenase OS=Cupriavidus taiwanensis (s... [more]
MDH_RALEJ2.023e-5847.71Malate dehydrogenase OS=Ralstonia eutropha (strain... [more]
MDH_NITEC2.023e-5852.31Malate dehydrogenase OS=Nitrosomonas eutropha (str... [more]
MDH_BORPD2.642e-5848.15Malate dehydrogenase OS=Bordetella petrii (strain ... [more]
MDH_ALCBS2.642e-5847.91Malate dehydrogenase OS=Alcanivorax borkumensis (s... [more]
MDH_PSYA25.885e-5849.62Malate dehydrogenase OS=Psychrobacter arcticus (st... [more]
MDH_STRGG7.686e-5852.27Malate dehydrogenase OS=Streptomyces griseus subsp... [more]
MDH_SACEN7.686e-5852.27Malate dehydrogenase OS=Saccharopolyspora erythrae... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-H10-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756378 ID=EY756378; Name=EY756378; organism=Citrus sinensis; type=EST; length=867bp
CCACGCGTCCGCTTCTCTCGCTTTACTGGAAAAATCTTTTCGTTTCCTGT
GATACATCTCTGATCCGAACTAATGGCCAAGGAACCAGTTCGCGTTCTCG
TCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGATTGCT
AGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATGCTTGA
TATCCCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTTGGTTG
ATGCTGCATTCCCTCTTCTTAAAGGTGTTGTTGCTACAACTGATGCTGTT
GAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTTCCAAG
AAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTCAATCT
ACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACTGCAAG
GTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTGAAAGA
ATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAGATTGG
ATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCCAAGTA
TCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCTCAGTA
CCCTGATGTCAACCATGCAACTGTNCATACTGCAGCTGGGGAAAAGCCTG
TCCGTGAGCTTGTCAAGGATGATGCATGGTTGAATGGAAATTCATAACAC
GNCCCAACAACGTGGTGCTGAATCATCAAAGCAGAAAGTCTCCAGGGCTC
TGCTGTGCTACTCTGCTGTGACATATTCCGGATTGGTTCTTGGACTCTGA
GGCACTTGGGCTCATGG
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