EY756373

Overview
NameEY756373
Unique NameEY756373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length418
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3639 contig Csv1_Contig3639:592..1009. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.682e-19
Identity = 42/81 (51.85%), Postives = 61/81 (75.31%), Query Frame = 2
Query:   20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPS 262
            R +VG L+W  DD ALET F + G+VL++K++ DRE+GRSRGFGFVT+   + + +AI+ +NG DL GR+I V+ A++R S
Sbjct:    9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSRGS 89          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.159e-18
Identity = 41/81 (50.62%), Postives = 60/81 (74.07%), Query Frame = 2
Query:   20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPS 262
            R +VG L+W  DD ALET F + G V+++K++ DRE+GRSRGFGFVT+   + + +AI+ +NG DL GR+I V+ A++R S
Sbjct:    9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSRGS 89          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.828e-17
Identity = 39/77 (50.65%), Postives = 58/77 (75.32%), Query Frame = 2
Query:   17 NRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 247
            +++YV NLSW +    L   F +Q   + AKV+YDR SGRSRGFGF+T+SSAE +++A+D++N V+L GR +R++VA
Sbjct:  217 HKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVA 293          

HSP 2 Score: 69.707 bits (169), Expect = 5.151e-12
Identity = 34/79 (43.04%), Postives = 46/79 (58.23%), Query Frame = 2
Query:   14 GNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAE 250
            G R+YVGNL + +    L  +F E G V   ++VYDR + RSRGF FVT  S EE   AI   +G  + GR ++V+  E
Sbjct:  113 GGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPE 191          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.118e-17
Identity = 40/81 (49.38%), Postives = 59/81 (72.84%), Query Frame = 2
Query:   20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPS 262
            R +VG L W  DD +L+  F + G V+++K++ DRE+GRSRGFGFVT++S E +  AI+++NG DL GR I V+ A++R S
Sbjct:    7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSRRS 87          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.118e-17
Identity = 38/81 (46.91%), Postives = 61/81 (75.31%), Query Frame = 2
Query:   20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPS 262
            R +VG L+W  D+ +LET F + G+++++K++ DRE+GRSRGFGFVT+   + + +AI+ +NG DL GR+I V+ A++R S
Sbjct:    9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSRGS 89          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.447e-16
Identity = 37/79 (46.84%), Postives = 56/79 (70.89%), Query Frame = 2
Query:   20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 256
            R +VG L+W   D  LE  F + G+V+++K++ DRE+GRSRGFGFVT+   + + +AID +NG +L GR I V+ A++R
Sbjct:    7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSR 85          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.880e-16
Identity = 38/79 (48.10%), Postives = 58/79 (73.42%), Query Frame = 2
Query:   20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 256
            R +VG L+W   + +LE  F   G++L++KV+ DRE+GRSRGFGFVT+SS   + +AI+++NG +L GR I V+ A++R
Sbjct:    9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSR 87          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.880e-16
Identity = 39/81 (48.15%), Postives = 54/81 (66.67%), Query Frame = 2
Query:   20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPS 262
            ++++G LSWG DD +L   F   G V++AKV+ DRE+GRSRGFGFV ++       AI  ++G +L GR IRV+ A  RPS
Sbjct:   36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.003e-15
Identity = 38/79 (48.10%), Postives = 59/79 (74.68%), Query Frame = 2
Query:   20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 256
            R +VG L+W  ++  LE  F   G+V+++KV+ DRE+GRSRGFGFVT+SS + + +AI+++NG +L GR I V+ A++R
Sbjct:    9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSR 87          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.234e-15
Identity = 37/81 (45.68%), Postives = 57/81 (70.37%), Query Frame = 2
Query:   20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPS 262
            R +VG L+W  +D  L+  F + G V+++K++ DRESGRSRGFGFVT+   + + +AI+ +NG +L GR I V+ A++R S
Sbjct:    7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSRGS 87          
The following BLAST results are available for this feature:
BLAST of EY756373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
GRP1_SINAL5.682e-1951.85Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP7_ARATH2.159e-1850.62Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
ROC5_NICSY1.828e-1750.6533 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
GRP_HORVU3.118e-1749.38Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRP2_SINAL3.118e-1746.91Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRP10_BRANA3.447e-1646.84Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
GRPA_MAIZE5.880e-1648.10Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP2_ARATH5.880e-1648.15Glycine-rich RNA-binding protein 2, mitochondrial ... [more]
GRP2_SORBI1.003e-1548.10Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
GRP8_ARATH2.234e-1545.68Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-H05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756373 ID=EY756373; Name=EY756373; organism=Citrus sinensis; type=EST; length=418bp
CCACGCGTCCGGTGGCAACCGTGTTTATGTTGGTAACCTTTCATGGGGTG
TTGATGATTTAGCTCTTGAGACTTTGTTTCGTGAGCAAGGGAAGGTTTTG
GAAGCCAAAGTGGTATATGACAGGGAGAGTGGTAGATCGCGGGGTTTCGG
GTTTGTGACTTACAGTTCTGCTGAAGAGGTTGACAATGCAATTGATTCCT
TGAATGGTGTAGATTTGGCCGGTAGAGCAATTCGAGTCTCAGTGGCTGAA
GCAAGGCCATCAAGGCGTCAATTTTGAGCTGTGGCAGAAACTAGTTTTCA
GTTGTTTTGATTTTATCGTTAGTTATTTGTGTTGTTATAAGGCTGCTTAT
CAGTGCTATCAAATCATCGGCTTCAAAGACAGATTCAGGATTAAAAAAAA
AAAAAAAAAAAAAAAAAA
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