EY756373

Overview
NameEY756373
Unique NameEY756373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length418
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3639 contig Csv1_Contig3639:592..1009. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: CSTFT_HUMAN (Cleavage stimulation factor 64 kDa subunit, tau variant OS=Homo sapiens GN=CSTF2T PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.360e-11
Identity = 30/83 (36.14%), Postives = 53/83 (63.86%), Query Frame = 2
Query:   23 VYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQ 271
            V+VGN+ +   +  L+ +F E G V+  ++VYDRE+G+ +G+GF  Y   E   +A+ +LNG + +GRA+RV  A +  ++ +
Sbjct:   18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEE 100          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: RBPE_ANASP (Putative RNA-binding protein rbpE OS=Anabaena sp. (strain PCC 7120) GN=rbpE PE=3 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 5.695e-11
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 2
Query:   23 VYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSR 265
            +YVGNLS+ V    L  +F E G V   ++  DRE+GR RGFGFV   S+   D AI +L+G +  GR ++V+ A  R  +
Sbjct:    3 IYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQALDGAEWMGRVLKVNKARPREEK 83          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.695e-11
Identity = 28/80 (35.00%), Postives = 50/80 (62.50%), Query Frame = 2
Query:   23 VYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPS 262
            ++VG LSW +DD  L+  F   G V+ A+V+Y+R + RSRG+G+V + +    + AI  + G ++ GR I   ++ ++P+
Sbjct:  170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPA 249          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: CSTF2_PONAB (Cleavage stimulation factor 64 kDa subunit OS=Pongo abelii GN=CSTF2 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.695e-11
Identity = 30/83 (36.14%), Postives = 53/83 (63.86%), Query Frame = 2
Query:   23 VYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQ 271
            V+VGN+ +   +  L+ +F E G V+  ++VYDRE+G+ +G+GF  Y   E   +A+ +LNG + +GRA+RV  A +  ++ +
Sbjct:   18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEE 100          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: CSTF2_MOUSE (Cleavage stimulation factor 64 kDa subunit OS=Mus musculus GN=Cstf2 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.695e-11
Identity = 30/83 (36.14%), Postives = 53/83 (63.86%), Query Frame = 2
Query:   23 VYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQ 271
            V+VGN+ +   +  L+ +F E G V+  ++VYDRE+G+ +G+GF  Y   E   +A+ +LNG + +GRA+RV  A +  ++ +
Sbjct:   18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEE 100          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: CSTF2_HUMAN (Cleavage stimulation factor 64 kDa subunit OS=Homo sapiens GN=CSTF2 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.695e-11
Identity = 30/83 (36.14%), Postives = 53/83 (63.86%), Query Frame = 2
Query:   23 VYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQ 271
            V+VGN+ +   +  L+ +F E G V+  ++VYDRE+G+ +G+GF  Y   E   +A+ +LNG + +GRA+RV  A +  ++ +
Sbjct:   18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEE 100          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: CSTF2_BOVIN (Cleavage stimulation factor 64 kDa subunit OS=Bos taurus GN=CSTF2 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.695e-11
Identity = 30/83 (36.14%), Postives = 53/83 (63.86%), Query Frame = 2
Query:   23 VYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQ 271
            V+VGN+ +   +  L+ +F E G V+  ++VYDRE+G+ +G+GF  Y   E   +A+ +LNG + +GRA+RV  A +  ++ +
Sbjct:   18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEE 100          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.438e-11
Identity = 33/81 (40.74%), Postives = 54/81 (66.67%), Query Frame = 2
Query:   20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPS 262
            ++Y+G LS G D+ +L+  F     V EA+V+ ++ +GRSRG+GFV + S +  ++AI ++NG +L G  I V+VA+  PS
Sbjct:   32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWPS 112          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.438e-11
Identity = 35/82 (42.68%), Postives = 47/82 (57.32%), Query Frame = 2
Query:   23 VYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRR 268
            VY+ N    +DD  L  +F   G  L  KV+ D +SGRSRGFGFV Y + EE   A+  +NG ++ GR I V  A+ R  R+
Sbjct:  193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQ 273          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.438e-11
Identity = 31/80 (38.75%), Postives = 54/80 (67.50%), Query Frame = 2
Query:    8 SGGNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 247
            S   ++++G L++  ++ +LE +F + G++ E  VV DRE+ RSRGFGFVT+ + ++  +A+ ++NG  + GR IRV  A
Sbjct:    2 SDEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQA 81          
The following BLAST results are available for this feature:
BLAST of EY756373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
CSTFT_HUMAN4.360e-1136.14Cleavage stimulation factor 64 kDa subunit, tau va... [more]
RBPE_ANASP5.695e-1141.98Putative RNA-binding protein rbpE OS=Anabaena sp. ... [more]
NSR1_YEAST5.695e-1135.00Nuclear localization sequence-binding protein OS=S... [more]
CSTF2_PONAB5.695e-1136.14Cleavage stimulation factor 64 kDa subunit OS=Pong... [more]
CSTF2_MOUSE5.695e-1136.14Cleavage stimulation factor 64 kDa subunit OS=Mus ... [more]
CSTF2_HUMAN5.695e-1136.14Cleavage stimulation factor 64 kDa subunit OS=Homo... [more]
CSTF2_BOVIN5.695e-1136.14Cleavage stimulation factor 64 kDa subunit OS=Bos ... [more]
RT19_ARATH7.438e-1140.7440S ribosomal protein S19, mitochondrial OS=Arabid... [more]
EPABA_XENLA7.438e-1142.68Embryonic polyadenylate-binding protein A OS=Xenop... [more]
CIRBB_XENLA7.438e-1138.75Cold-inducible RNA-binding protein B OS=Xenopus la... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-H05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756373 ID=EY756373; Name=EY756373; organism=Citrus sinensis; type=EST; length=418bp
CCACGCGTCCGGTGGCAACCGTGTTTATGTTGGTAACCTTTCATGGGGTG
TTGATGATTTAGCTCTTGAGACTTTGTTTCGTGAGCAAGGGAAGGTTTTG
GAAGCCAAAGTGGTATATGACAGGGAGAGTGGTAGATCGCGGGGTTTCGG
GTTTGTGACTTACAGTTCTGCTGAAGAGGTTGACAATGCAATTGATTCCT
TGAATGGTGTAGATTTGGCCGGTAGAGCAATTCGAGTCTCAGTGGCTGAA
GCAAGGCCATCAAGGCGTCAATTTTGAGCTGTGGCAGAAACTAGTTTTCA
GTTGTTTTGATTTTATCGTTAGTTATTTGTGTTGTTATAAGGCTGCTTAT
CAGTGCTATCAAATCATCGGCTTCAAAGACAGATTCAGGATTAAAAAAAA
AAAAAAAAAAAAAAAAAA
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