EY732276 | Citrus Genome Database

Overview


Name	EY732276
Unique Name	EY732276
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	638

Libraries


Library Name	Type
Sweet orange fruit, development stadium (5 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_GRAFK (ATP synthase subunit beta OS=Gramella forsetii (strain KT0803) GN=atpD PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.006e-19
Identity = 47/82 (57.32%), Postives = 63/82 (76.83%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVLSR+I+ELGIYPAVD LDSTSR+L+  ILG+EHY+ A+ V+ +L   + L  +IAI GM++LSE D+  V R  ++
Sbjct:  355 LDATTVLSRKIAELGIYPAVDPLDSTSRILTADILGDEHYDCAQRVKELLQRYKELQDIIAILGMEELSEEDKLAVSRARRV 436

HSP 2 Score: 23.0978 bits (48), Expect = 1.006e-19
Identity = 9/13 (69.23%), Postives = 9/13 (69.23%), Query Frame = 2

Query:  254 LDPPFHVGEVFTG 292
            L  PFHV E FTG
Sbjct:  440 LSQPFHVAEQFTG 452

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_MANES (ATP synthase subunit beta, chloroplastic OS=Manihot esculenta GN=atpB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.006e-19
Identity = 49/82 (59.76%), Postives = 58/82 (70.73%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVLSR ++  GIYPAVD LDSTS ML P I+GEEHY TA+ V+  L   + L  +IAI G+D+LSE D  TV R  KI
Sbjct:  348 LDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKI 429

HSP 2 Score: 22.3274 bits (46), Expect = 1.006e-19
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PF V EVFTG+
Sbjct:  433 LSQPFFVAEVFTGS 446

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_LEPVR (ATP synthase subunit beta, chloroplastic OS=Lepidium virginicum GN=atpB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.006e-19
Identity = 49/82 (59.76%), Postives = 58/82 (70.73%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVLSR ++  GIYPAVD LDSTS ML P I+GEEHY TA+ V+  L   + L  +IAI G+D+LSE D  TV R  KI
Sbjct:  350 LDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQQVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKI 431

HSP 2 Score: 22.3274 bits (46), Expect = 1.006e-19
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PF V EVFTG+
Sbjct:  435 LSQPFFVAEVFTGS 448

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_WHIBI (ATP synthase subunit beta, chloroplastic OS=Whiteheadia bifolia GN=atpB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.006e-19
Identity = 49/82 (59.76%), Postives = 58/82 (70.73%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVLSR ++  GIYPAVD LDSTS ML P I+GEEHY TA+ V+  L   + L  +IAI G+D+LSE D  TV R  KI
Sbjct:  346 LDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKI 427

HSP 2 Score: 22.3274 bits (46), Expect = 1.006e-19
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PF V EVFTG+
Sbjct:  431 LSQPFFVAEVFTGS 444

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_VITVI (ATP synthase subunit beta, chloroplastic OS=Vitis vinifera GN=atpB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.006e-19
Identity = 49/82 (59.76%), Postives = 58/82 (70.73%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVLSR ++  GIYPAVD LDSTS ML P I+GEEHY TA+ V+  L   + L  +IAI G+D+LSE D  TV R  KI
Sbjct:  346 LDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKI 427

HSP 2 Score: 22.3274 bits (46), Expect = 1.006e-19
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PF V EVFTG+
Sbjct:  431 LSQPFFVAEVFTGS 444

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_TROAR (ATP synthase subunit beta, chloroplastic OS=Trochodendron aralioides GN=atpB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.006e-19
Identity = 49/82 (59.76%), Postives = 58/82 (70.73%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVLSR ++  GIYPAVD LDSTS ML P I+GEEHY TA+ V+  L   + L  +IAI G+D+LSE D  TV R  KI
Sbjct:  346 LDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKI 427

HSP 2 Score: 22.3274 bits (46), Expect = 1.006e-19
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PF V EVFTG+
Sbjct:  431 LSQPFFVAEVFTGS 444

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_SOYBN (ATP synthase subunit beta, chloroplastic OS=Glycine max GN=atpB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.006e-19
Identity = 49/82 (59.76%), Postives = 58/82 (70.73%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVLSR ++  GIYPAVD LDSTS ML P I+GEEHY TA+ V+  L   + L  +IAI G+D+LSE D  TV R  KI
Sbjct:  346 LDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKI 427

HSP 2 Score: 22.3274 bits (46), Expect = 1.006e-19
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PF V EVFTG+
Sbjct:  431 LSQPFFVAEVFTGS 444

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_RAPSA (ATP synthase subunit beta, chloroplastic OS=Raphanus sativus GN=atpB PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.006e-19
Identity = 49/82 (59.76%), Postives = 58/82 (70.73%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVLSR ++  GIYPAVD LDSTS ML P I+GEEHY TA+ V+  L   + L  +IAI G+D+LSE D  TV R  KI
Sbjct:  346 LDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQQVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKI 427

HSP 2 Score: 22.3274 bits (46), Expect = 1.006e-19
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PF V EVFTG+
Sbjct:  431 LSQPFFVAEVFTGS 444

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_POPTR (ATP synthase subunit beta, chloroplastic OS=Populus trichocarpa GN=atpB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.006e-19
Identity = 49/82 (59.76%), Postives = 58/82 (70.73%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVLSR ++  GIYPAVD LDSTS ML P I+GEEHY TA+ V+  L   + L  +IAI G+D+LSE D  TV R  KI
Sbjct:  346 LDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKI 427

HSP 2 Score: 22.3274 bits (46), Expect = 1.006e-19
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PF V EVFTG+
Sbjct:  431 LSQPFFVAEVFTGS 444

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_POPTM (ATP synthase subunit beta, chloroplastic OS=Populus tremuloides GN=atpB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.006e-19
Identity = 49/82 (59.76%), Postives = 58/82 (70.73%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVLSR ++  GIYPAVD LDSTS ML P I+GEEHY TA+ V+  L   + L  +IAI G+D+LSE D  TV R  KI
Sbjct:  346 LDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKI 427

HSP 2 Score: 22.3274 bits (46), Expect = 1.006e-19
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PF V EVFTG+
Sbjct:  431 LSQPFFVAEVFTGS 444

The following BLAST results are available for this feature:

BLAST of EY732276 vs. ExPASy Swiss-Prot

BLAST of EY732276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
ATPB_GRAFK	1.006e-19	57.32	ATP synthase subunit beta OS=Gramella forsetii (st...	[more]
ATPB_MANES	1.006e-19	59.76	ATP synthase subunit beta, chloroplastic OS=Maniho...	[more]
ATPB_LEPVR	1.006e-19	59.76	ATP synthase subunit beta, chloroplastic OS=Lepidi...	[more]
ATPB_WHIBI	1.006e-19	59.76	ATP synthase subunit beta, chloroplastic OS=Whiteh...	[more]
ATPB_VITVI	1.006e-19	59.76	ATP synthase subunit beta, chloroplastic OS=Vitis ...	[more]
ATPB_TROAR	1.006e-19	59.76	ATP synthase subunit beta, chloroplastic OS=Trocho...	[more]
ATPB_SOYBN	1.006e-19	59.76	ATP synthase subunit beta, chloroplastic OS=Glycin...	[more]
ATPB_RAPSA	1.006e-19	59.76	ATP synthase subunit beta, chloroplastic OS=Raphan...	[more]
ATPB_POPTR	1.006e-19	59.76	ATP synthase subunit beta, chloroplastic OS=Populu...	[more]
ATPB_POPTM	1.006e-19	59.76	ATP synthase subunit beta, chloroplastic OS=Populu...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-704-059-E01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY732276 ID=EY732276; Name=EY732276; organism=Citrus sinensis; type=EST; length=638bp
TTGGATGCCACGACTGTGTTGTCGCGTCAAATCTCTGAGCTTGGTATATA
TCCTGCTGTCGATGCTCTGGATTCCACATCCCGTATGCTTTCTCCGCACA
TTTTGGGCGAGGAACACTACAACACTGCTCGTGGTGTGCAGAATGTTCTT
CACAACTGACAGAATCTCGCACATATGATCGCCATCTGGGGTATGGATGA
CCTTAGTGAACATGACGAGTTCACTGTTCCTCGACCACCTAAGATCCACG
GTTCTTGACCCACCCTTCCATGTGGGGGAAGTTTTCACAGGTGCCCTGCC
CAGTATGTGAGTTGAATGAGACCATGGCGGTCTCCCGGCAGTGTCGGATG
GACAGAGGAGCAGCGGAAGAGAGCGCTCTACGTGATGGGGAGGCCCACGA
GCCAACGCGGCGCCCCCACCATCCACCCACCCCACTCCCATCCCCCCCCC
GCACCCGCCAACCGCCCCTCAGCGCCCCCCCCCGGGCCGGGGCAGCGTCC
CCCCTGGGCGGCCCACGCGGCTCCTGGGATCCCCGCCACGCGCCCGAGCT
CGGGCCGCGGGCGCGGCCGGCGGGGCGCGGGGCACCGGCGGCGGGGGNTN
TGAGAGGAGGGAAGGGGGTGGGGGGGTCGCGCGGCGCC