EY732276 | Citrus Genome Database

Overview


Name	EY732276
Unique Name	EY732276
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	638

Libraries


Library Name	Type
Sweet orange fruit, development stadium (5 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_SHEAM (ATP synthase subunit beta OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=atpD PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.896e-23
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDAT VLSRQI+ LGIYPAVD LDSTSR L P ++G+EHY+ A GVQNVL   + L  +IAI GMD+LS+ D+ TV R  KI
Sbjct:  318 LDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDVANGVQNVLQRYKELKDIIAILGMDELSDDDKMTVSRARKI 399

HSP 2 Score: 25.7942 bits (55), Expect = 2.896e-23
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PFHV EVFTG+
Sbjct:  403 LSQPFHVAEVFTGS 416

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_ERYLH (ATP synthase subunit beta OS=Erythrobacter litoralis (strain HTCC2594) GN=atpD PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.766e-23
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATT L+R ISELGIYPAVD LDSTSR+L P ++G+EHY TAR VQ  L   ++L  +IAI GMD+LSE D+ TV R  KI
Sbjct:  337 LDATTTLNRAISELGIYPAVDPLDSTSRVLEPRVVGQEHYETARKVQETLQKYKSLQDIIAILGMDELSEEDKLTVARARKI 418

HSP 2 Score: 25.409 bits (54), Expect = 3.766e-23
Identity = 10/13 (76.92%), Postives = 10/13 (76.92%), Query Frame = 2

Query:  254 LDPPFHVGEVFTG 292
            L  PFHV EVFTG
Sbjct:  422 LSQPFHVAEVFTG 434

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_CAMJD (ATP synthase subunit beta OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=atpD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.766e-23
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVL+R I+E GIYPAVD LDSTSRML P+I+GEEHY  ARGVQ+VL   ++L  +IAI GMD+LSE D+  V R  KI
Sbjct:  319 LDATTVLNRAIAEKGIYPAVDPLDSTSRMLDPNIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKLVVERARKI 400

HSP 2 Score: 22.3274 bits (46), Expect = 3.766e-23
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PF V EVFTG+
Sbjct:  404 LSQPFFVAEVFTGS 417

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_SYNWW (ATP synthase subunit beta OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=atpD PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.767e-23
Identity = 52/82 (63.41%), Postives = 64/82 (78.05%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVLSR ISELGIYPAVD LDSTSR+L P ++G++HY+TARGVQ +L   + L  +IAI GMD+LS+ D+  V R  KI
Sbjct:  330 LDATTVLSRAISELGIYPAVDPLDSTSRILDPQVVGDKHYDTARGVQKILQRYKELQDIIAILGMDELSDEDKLIVARARKI 411

HSP 2 Score: 23.483 bits (49), Expect = 3.767e-23
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PFHV E FTG+
Sbjct:  415 LSQPFHVAEQFTGS 428

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_RICAH (ATP synthase subunit beta OS=Rickettsia akari (strain Hartford) GN=atpD PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.767e-23
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVLSRQI+E GIYPAVD LDS S++L P I+GEEHY+ AR VQ VL   ++L  +IAI GMD+LSE D+ TV R  KI
Sbjct:  328 LDATTVLSRQIAEFGIYPAVDPLDSNSQVLDPMIVGEEHYSVARQVQQVLQTYKSLQDIIAILGMDELSEEDKLTVSRARKI 409

HSP 2 Score: 25.7942 bits (55), Expect = 3.767e-23
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PFHV EVFTG+
Sbjct:  413 LSQPFHVAEVFTGS 426

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_GEOSF (ATP synthase subunit beta OS=Geobacter sp. (strain FRC-32) GN=atpD PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.768e-23
Identity = 54/82 (65.85%), Postives = 63/82 (76.83%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVLSRQI+ELGIYPAVD LDSTSR+L P ++GEEHY  AR VQ VL   ++L  +IAI GMD+LSE D+  V R  KI
Sbjct:  324 LDATTVLSRQIAELGIYPAVDPLDSTSRILDPQVIGEEHYAIARQVQYVLQKYKDLQDIIAILGMDELSEEDKLVVARARKI 405

HSP 2 Score: 24.2534 bits (51), Expect = 3.768e-23
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PFHV E FTG+
Sbjct:  409 LSQPFHVAEAFTGS 422

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_GEOMG (ATP synthase subunit beta OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=atpD PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.768e-23
Identity = 54/82 (65.85%), Postives = 63/82 (76.83%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVLSRQI+ELGIYPAVD LDSTSR+L P ++GEEHY  AR VQ VL   ++L  +IAI GMD+LSE D+  V R  KI
Sbjct:  324 LDATTVLSRQIAELGIYPAVDPLDSTSRILDPQVIGEEHYAIARQVQYVLQKYKDLQDIIAILGMDELSEEDKLVVARARKI 405

HSP 2 Score: 24.2534 bits (51), Expect = 3.768e-23
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PFHV E FTG+
Sbjct:  409 LSQPFHVAEAFTGS 422

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_CAMJR (ATP synthase subunit beta OS=Campylobacter jejuni (strain RM1221) GN=atpD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.768e-23
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVL+R I+E GIYPAVD LDSTSRML P+I+GEEHY  ARGVQ+VL   ++L  +IAI GMD+LSE D+  V R  KI
Sbjct:  319 LDATTVLNRAIAEKGIYPAVDPLDSTSRMLDPNIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKLVVERARKI 400

HSP 2 Score: 22.3274 bits (46), Expect = 3.768e-23
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PF V EVFTG+
Sbjct:  404 LSQPFFVAEVFTGS 417

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_CAMJJ (ATP synthase subunit beta OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=atpD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.768e-23
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVL+R I+E GIYPAVD LDSTSRML P+I+GEEHY  ARGVQ+VL   ++L  +IAI GMD+LSE D+  V R  KI
Sbjct:  319 LDATTVLNRAIAEKGIYPAVDPLDSTSRMLDPNIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKLVVERARKI 400

HSP 2 Score: 22.3274 bits (46), Expect = 3.768e-23
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PF V EVFTG+
Sbjct:  404 LSQPFFVAEVFTGS 417

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_CAMJE (ATP synthase subunit beta OS=Campylobacter jejuni GN=atpD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.768e-23
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVL+R I+E GIYPAVD LDSTSRML P+I+GEEHY  ARGVQ+VL   ++L  +IAI GMD+LSE D+  V R  KI
Sbjct:  319 LDATTVLNRAIAEKGIYPAVDPLDSTSRMLDPNIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKLVVERARKI 400

HSP 2 Score: 22.3274 bits (46), Expect = 3.768e-23
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PF V EVFTG+
Sbjct:  404 LSQPFFVAEVFTGS 417

The following BLAST results are available for this feature:

BLAST of EY732276 vs. ExPASy Swiss-Prot

BLAST of EY732276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
ATPB_SHEAM	2.896e-23	63.41	ATP synthase subunit beta OS=Shewanella amazonensi...	[more]
ATPB_ERYLH	3.766e-23	63.41	ATP synthase subunit beta OS=Erythrobacter litoral...	[more]
ATPB_CAMJD	3.766e-23	65.85	ATP synthase subunit beta OS=Campylobacter jejuni ...	[more]
ATPB_SYNWW	3.767e-23	63.41	ATP synthase subunit beta OS=Syntrophomonas wolfei...	[more]
ATPB_RICAH	3.767e-23	64.63	ATP synthase subunit beta OS=Rickettsia akari (str...	[more]
ATPB_GEOSF	3.768e-23	65.85	ATP synthase subunit beta OS=Geobacter sp. (strain...	[more]
ATPB_GEOMG	3.768e-23	65.85	ATP synthase subunit beta OS=Geobacter metalliredu...	[more]
ATPB_CAMJR	3.768e-23	65.85	ATP synthase subunit beta OS=Campylobacter jejuni ...	[more]
ATPB_CAMJJ	3.768e-23	65.85	ATP synthase subunit beta OS=Campylobacter jejuni ...	[more]
ATPB_CAMJE	3.768e-23	65.85	ATP synthase subunit beta OS=Campylobacter jejuni ...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C3-704-059-E01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY732276 ID=EY732276; Name=EY732276; organism=Citrus sinensis; type=EST; length=638bp
TTGGATGCCACGACTGTGTTGTCGCGTCAAATCTCTGAGCTTGGTATATA
TCCTGCTGTCGATGCTCTGGATTCCACATCCCGTATGCTTTCTCCGCACA
TTTTGGGCGAGGAACACTACAACACTGCTCGTGGTGTGCAGAATGTTCTT
CACAACTGACAGAATCTCGCACATATGATCGCCATCTGGGGTATGGATGA
CCTTAGTGAACATGACGAGTTCACTGTTCCTCGACCACCTAAGATCCACG
GTTCTTGACCCACCCTTCCATGTGGGGGAAGTTTTCACAGGTGCCCTGCC
CAGTATGTGAGTTGAATGAGACCATGGCGGTCTCCCGGCAGTGTCGGATG
GACAGAGGAGCAGCGGAAGAGAGCGCTCTACGTGATGGGGAGGCCCACGA
GCCAACGCGGCGCCCCCACCATCCACCCACCCCACTCCCATCCCCCCCCC
GCACCCGCCAACCGCCCCTCAGCGCCCCCCCCCGGGCCGGGGCAGCGTCC
CCCCTGGGCGGCCCACGCGGCTCCTGGGATCCCCGCCACGCGCCCGAGCT
CGGGCCGCGGGCGCGGCCGGCGGGGCGCGGGGCACCGGCGGCGGGGGNTN
TGAGAGGAGGGAAGGGGGTGGGGGGGTCGCGCGGCGCC