EY732276 | Citrus Genome Database

Overview


Name	EY732276
Unique Name	EY732276
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	638

Libraries


Library Name	Type
Sweet orange fruit, development stadium (5 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_CAMJ8 (ATP synthase subunit beta OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=atpD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.768e-23
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVL+R I+E GIYPAVD LDSTSRML P+I+GEEHY  ARGVQ+VL   ++L  +IAI GMD+LSE D+  V R  KI
Sbjct:  319 LDATTVLNRAIAEKGIYPAVDPLDSTSRMLDPNIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKLVVERARKI 400

HSP 2 Score: 22.3274 bits (46), Expect = 3.768e-23
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PF V EVFTG+
Sbjct:  404 LSQPFFVAEVFTGS 417

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_CHRSD (ATP synthase subunit beta OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=atpD PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.769e-23
Identity = 53/82 (64.63%), Postives = 62/82 (75.61%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDAT VL+R I+ELGIYPA+D LDSTSR L P  +GEEHYNTARGVQ VL   + L  +IAI GMD+LS+ D+ TV R  KI
Sbjct:  313 LDATVVLARSIAELGIYPAIDPLDSTSRQLDPLTVGEEHYNTARGVQGVLQRYKELKDIIAILGMDELSDEDKLTVSRARKI 394

HSP 2 Score: 23.483 bits (49), Expect = 3.769e-23
Identity = 10/14 (71.43%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PF V EVFTGA
Sbjct:  398 LSQPFFVAEVFTGA 411

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_ALHEH (ATP synthase subunit beta OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=atpD PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.769e-23
Identity = 54/82 (65.85%), Postives = 62/82 (75.61%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDAT VL+R I+ELGIYPAVD LDSTSR L P ++GEEHYN ARGVQ VL   + L  +IAI GMD+LSE D+ TV R  KI
Sbjct:  314 LDATVVLARGIAELGIYPAVDPLDSTSRQLDPLVVGEEHYNVARGVQGVLQRYKELRDIIAILGMDELSEDDKLTVARARKI 395

HSP 2 Score: 23.483 bits (49), Expect = 3.769e-23
Identity = 10/14 (71.43%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PF V EVFTGA
Sbjct:  399 LSQPFFVAEVFTGA 412

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_CAMLR (ATP synthase subunit beta OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=atpD PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.900e-23
Identity = 54/82 (65.85%), Postives = 63/82 (76.83%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVL+R I+E GIYPAVD LDSTSRML P I+GEEHY  ARGVQ+VL   ++L  +IAI GMD+LSE D+  V R  KI
Sbjct:  319 LDATTVLNRSIAEKGIYPAVDPLDSTSRMLDPQIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKLIVERARKI 400

HSP 2 Score: 22.3274 bits (46), Expect = 4.900e-23
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PF V EVFTG+
Sbjct:  404 LSQPFFVAEVFTGS 417

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_NOVAD (ATP synthase subunit beta OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=atpD PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.901e-23
Identity = 52/82 (63.41%), Postives = 63/82 (76.83%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATT L+R ISELGIYPAVD LDSTSR+L+P ++G+EHY TAR VQ  L   ++L  +IAI GMD+LSE D+ TV R  KI
Sbjct:  333 LDATTTLNRAISELGIYPAVDPLDSTSRVLTPAVVGQEHYETARRVQETLQKYKSLQDIIAILGMDELSEEDKLTVARARKI 414

HSP 2 Score: 25.409 bits (54), Expect = 4.901e-23
Identity = 10/13 (76.92%), Postives = 10/13 (76.92%), Query Frame = 2

Query:  254 LDPPFHVGEVFTG 292
            L  PFHV EVFTG
Sbjct:  418 LSQPFHVAEVFTG 430

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_STIAU (ATP synthase subunit beta OS=Stigmatella aurantiaca GN=atpD PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.901e-23
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVL+R ISELGIYPAVD LDSTSR+L P+++G EHY  AR VQ +L   + L  +IAI GMD+LSE D+ TV R  KI
Sbjct:  334 LDATTVLNRAISELGIYPAVDPLDSTSRILDPNVVGPEHYAVARKVQGILQKYKELQDIIAILGMDELSETDKLTVARARKI 415

HSP 2 Score: 26.9498 bits (58), Expect = 4.901e-23
Identity = 11/14 (78.57%), Postives = 11/14 (78.57%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PFHV EVFTGA
Sbjct:  419 LSQPFHVAEVFTGA 432

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_RICRS (ATP synthase subunit beta OS=Rickettsia rickettsii (strain Sheila Smith) GN=atpD PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.902e-23
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVLSRQI+E GIYPAVD LDS S++L P I+GEEHY+ AR VQ VL   ++L  +I I GMD+LSE D+ TV R  KI
Sbjct:  328 LDATTVLSRQIAEFGIYPAVDPLDSNSQVLDPMIVGEEHYSVARQVQQVLQTYKSLQDIITILGMDELSEEDKLTVARARKI 409

HSP 2 Score: 26.9498 bits (58), Expect = 4.902e-23
Identity = 11/14 (78.57%), Postives = 11/14 (78.57%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PFHV EVFTGA
Sbjct:  413 LSQPFHVAEVFTGA 426

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_RICRO (ATP synthase subunit beta OS=Rickettsia rickettsii (strain Iowa) GN=atpD PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 4.902e-23
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVLSRQI+E GIYPAVD LDS S++L P I+GEEHY+ AR VQ VL   ++L  +I I GMD+LSE D+ TV R  KI
Sbjct:  328 LDATTVLSRQIAEFGIYPAVDPLDSNSQVLDPMIVGEEHYSVARQVQQVLQTYKSLQDIITILGMDELSEEDKLTVARARKI 409

HSP 2 Score: 26.9498 bits (58), Expect = 4.902e-23
Identity = 11/14 (78.57%), Postives = 11/14 (78.57%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PFHV EVFTGA
Sbjct:  413 LSQPFHVAEVFTGA 426

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_RICCN (ATP synthase subunit beta OS=Rickettsia conorii GN=atpD PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 4.902e-23
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVLSRQI+E GIYPAVD LDS S++L P I+GEEHY+ AR VQ VL   ++L  +I I GMD+LSE D+ TV R  KI
Sbjct:  328 LDATTVLSRQIAEFGIYPAVDPLDSNSQVLDPMIVGEEHYSVARQVQQVLQTYKSLQDIITILGMDELSEEDKLTVARARKI 409

HSP 2 Score: 26.9498 bits (58), Expect = 4.902e-23
Identity = 11/14 (78.57%), Postives = 11/14 (78.57%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PFHV EVFTGA
Sbjct:  413 LSQPFHVAEVFTGA 426

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_RICAE (ATP synthase subunit beta OS=Rickettsia africae (strain ESF-5) GN=atpD PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.902e-23
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVLSRQI+E GIYPAVD LDS S++L P I+GEEHY+ AR VQ VL   ++L  +I I GMD+LSE D+ TV R  KI
Sbjct:  328 LDATTVLSRQIAEFGIYPAVDPLDSNSQVLDPMIVGEEHYSVARQVQQVLQTYKSLQDIITILGMDELSEEDKLTVARARKI 409

HSP 2 Score: 26.9498 bits (58), Expect = 4.902e-23
Identity = 11/14 (78.57%), Postives = 11/14 (78.57%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PFHV EVFTGA
Sbjct:  413 LSQPFHVAEVFTGA 426

The following BLAST results are available for this feature:

BLAST of EY732276 vs. ExPASy Swiss-Prot

BLAST of EY732276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
ATPB_CAMJ8	3.768e-23	65.85	ATP synthase subunit beta OS=Campylobacter jejuni ...	[more]
ATPB_CHRSD	3.769e-23	64.63	ATP synthase subunit beta OS=Chromohalobacter sale...	[more]
ATPB_ALHEH	3.769e-23	65.85	ATP synthase subunit beta OS=Alkalilimnicola ehrli...	[more]
ATPB_CAMLR	4.900e-23	65.85	ATP synthase subunit beta OS=Campylobacter lari (s...	[more]
ATPB_NOVAD	4.901e-23	63.41	ATP synthase subunit beta OS=Novosphingobium aroma...	[more]
ATPB_STIAU	4.901e-23	63.41	ATP synthase subunit beta OS=Stigmatella aurantiac...	[more]
ATPB_RICRS	4.902e-23	63.41	ATP synthase subunit beta OS=Rickettsia rickettsii...	[more]
ATPB_RICRO	4.902e-23	63.41	ATP synthase subunit beta OS=Rickettsia rickettsii...	[more]
ATPB_RICCN	4.902e-23	63.41	ATP synthase subunit beta OS=Rickettsia conorii GN...	[more]
ATPB_RICAE	4.902e-23	63.41	ATP synthase subunit beta OS=Rickettsia africae (s...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C3-704-059-E01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY732276 ID=EY732276; Name=EY732276; organism=Citrus sinensis; type=EST; length=638bp
TTGGATGCCACGACTGTGTTGTCGCGTCAAATCTCTGAGCTTGGTATATA
TCCTGCTGTCGATGCTCTGGATTCCACATCCCGTATGCTTTCTCCGCACA
TTTTGGGCGAGGAACACTACAACACTGCTCGTGGTGTGCAGAATGTTCTT
CACAACTGACAGAATCTCGCACATATGATCGCCATCTGGGGTATGGATGA
CCTTAGTGAACATGACGAGTTCACTGTTCCTCGACCACCTAAGATCCACG
GTTCTTGACCCACCCTTCCATGTGGGGGAAGTTTTCACAGGTGCCCTGCC
CAGTATGTGAGTTGAATGAGACCATGGCGGTCTCCCGGCAGTGTCGGATG
GACAGAGGAGCAGCGGAAGAGAGCGCTCTACGTGATGGGGAGGCCCACGA
GCCAACGCGGCGCCCCCACCATCCACCCACCCCACTCCCATCCCCCCCCC
GCACCCGCCAACCGCCCCTCAGCGCCCCCCCCCGGGCCGGGGCAGCGTCC
CCCCTGGGCGGCCCACGCGGCTCCTGGGATCCCCGCCACGCGCCCGAGCT
CGGGCCGCGGGCGCGGCCGGCGGGGCGCGGGGCACCGGCGGCGGGGGNTN
TGAGAGGAGGGAAGGGGGTGGGGGGGTCGCGCGGCGCC