EY732276 | Citrus Genome Database

Overview


Name	EY732276
Unique Name	EY732276
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	638

Libraries


Library Name	Type
Sweet orange fruit, development stadium (5 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_SALEP (ATP synthase subunit beta OS=Salmonella enteritidis PT4 (strain P125109) GN=atpD PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.904e-23
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDAT VLSRQI+ LGIYPAVD LDSTSR L P ++G+EHY+TARGVQ++L   Q L  +IAI GMD+LSE D+  V R  KI
Sbjct:  316 LDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKI 397

HSP 2 Score: 22.3274 bits (46), Expect = 4.904e-23
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PF V EVFTG+
Sbjct:  401 LSQPFFVAEVFTGS 414

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_SALDC (ATP synthase subunit beta OS=Salmonella dublin (strain CT_02021853) GN=atpD PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.904e-23
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDAT VLSRQI+ LGIYPAVD LDSTSR L P ++G+EHY+TARGVQ++L   Q L  +IAI GMD+LSE D+  V R  KI
Sbjct:  316 LDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKI 397

HSP 2 Score: 22.3274 bits (46), Expect = 4.904e-23
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PF V EVFTG+
Sbjct:  401 LSQPFFVAEVFTGS 414

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_SALCH (ATP synthase subunit beta OS=Salmonella choleraesuis GN=atpD PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.904e-23
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDAT VLSRQI+ LGIYPAVD LDSTSR L P ++G+EHY+TARGVQ++L   Q L  +IAI GMD+LSE D+  V R  KI
Sbjct:  316 LDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKI 397

HSP 2 Score: 22.3274 bits (46), Expect = 4.904e-23
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PF V EVFTG+
Sbjct:  401 LSQPFFVAEVFTGS 414

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_SALAR (ATP synthase subunit beta OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=atpD PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.904e-23
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDAT VLSRQI+ LGIYPAVD LDSTSR L P ++G+EHY+TARGVQ++L   Q L  +IAI GMD+LSE D+  V R  KI
Sbjct:  316 LDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKI 397

HSP 2 Score: 22.3274 bits (46), Expect = 4.904e-23
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PF V EVFTG+
Sbjct:  401 LSQPFFVAEVFTGS 414

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_SALA4 (ATP synthase subunit beta OS=Salmonella agona (strain SL483) GN=atpD PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.904e-23
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDAT VLSRQI+ LGIYPAVD LDSTSR L P ++G+EHY+TARGVQ++L   Q L  +IAI GMD+LSE D+  V R  KI
Sbjct:  316 LDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKI 397

HSP 2 Score: 22.3274 bits (46), Expect = 4.904e-23
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PF V EVFTG+
Sbjct:  401 LSQPFFVAEVFTGS 414

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_KLEP7 (ATP synthase subunit beta OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=atpD PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.904e-23
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDAT VLSRQI+ LGIYPAVD LDSTSR L P ++G+EHY+TARGVQ++L   Q L  +IAI GMD+LSE D+  V R  KI
Sbjct:  316 LDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKI 397

HSP 2 Score: 22.3274 bits (46), Expect = 4.904e-23
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PF V EVFTG+
Sbjct:  401 LSQPFFVAEVFTGS 414

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_KLEP3 (ATP synthase subunit beta OS=Klebsiella pneumoniae (strain 342) GN=atpD PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.904e-23
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDAT VLSRQI+ LGIYPAVD LDSTSR L P ++G+EHY+TARGVQ++L   Q L  +IAI GMD+LSE D+  V R  KI
Sbjct:  316 LDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKI 397

HSP 2 Score: 22.3274 bits (46), Expect = 4.904e-23
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PF V EVFTG+
Sbjct:  401 LSQPFFVAEVFTGS 414

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_ESCF3 (ATP synthase subunit beta OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=atpD PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.904e-23
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDAT VLSRQI+ LGIYPAVD LDSTSR L P ++G+EHY+TARGVQ++L   Q L  +IAI GMD+LSE D+  V R  KI
Sbjct:  316 LDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKI 397

HSP 2 Score: 22.3274 bits (46), Expect = 4.904e-23
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PF V EVFTG+
Sbjct:  401 LSQPFFVAEVFTGS 414

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_EDWI9 (ATP synthase subunit beta OS=Edwardsiella ictaluri (strain 93-146) GN=atpD PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.904e-23
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDAT VLSRQI+ LGIYPAVD LDSTSR L P ++G+EHY+TARGVQ++L   Q L  +IAI GMD+LSE D+  V R  KI
Sbjct:  316 LDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKI 397

HSP 2 Score: 22.3274 bits (46), Expect = 4.904e-23
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PF V EVFTG+
Sbjct:  401 LSQPFFVAEVFTGS 414

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPB_ECOUT (ATP synthase subunit beta OS=Escherichia coli (strain UTI89 / UPEC) GN=atpD PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.904e-23
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDAT VLSRQI+ LGIYPAVD LDSTSR L P ++G+EHY+TARGVQ++L   Q L  +IAI GMD+LSE D+  V R  KI
Sbjct:  316 LDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKI 397

HSP 2 Score: 22.3274 bits (46), Expect = 4.904e-23
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PF V EVFTG+
Sbjct:  401 LSQPFFVAEVFTGS 414

The following BLAST results are available for this feature:

BLAST of EY732276 vs. ExPASy Swiss-Prot

BLAST of EY732276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
ATPB_SALEP	4.904e-23	64.63	ATP synthase subunit beta OS=Salmonella enteritidi...	[more]
ATPB_SALDC	4.904e-23	64.63	ATP synthase subunit beta OS=Salmonella dublin (st...	[more]
ATPB_SALCH	4.904e-23	64.63	ATP synthase subunit beta OS=Salmonella choleraesu...	[more]
ATPB_SALAR	4.904e-23	64.63	ATP synthase subunit beta OS=Salmonella arizonae (...	[more]
ATPB_SALA4	4.904e-23	64.63	ATP synthase subunit beta OS=Salmonella agona (str...	[more]
ATPB_KLEP7	4.904e-23	64.63	ATP synthase subunit beta OS=Klebsiella pneumoniae...	[more]
ATPB_KLEP3	4.904e-23	64.63	ATP synthase subunit beta OS=Klebsiella pneumoniae...	[more]
ATPB_ESCF3	4.904e-23	64.63	ATP synthase subunit beta OS=Escherichia fergusoni...	[more]
ATPB_EDWI9	4.904e-23	64.63	ATP synthase subunit beta OS=Edwardsiella ictaluri...	[more]
ATPB_ECOUT	4.904e-23	64.63	ATP synthase subunit beta OS=Escherichia coli (str...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-704-059-E01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY732276 ID=EY732276; Name=EY732276; organism=Citrus sinensis; type=EST; length=638bp
TTGGATGCCACGACTGTGTTGTCGCGTCAAATCTCTGAGCTTGGTATATA
TCCTGCTGTCGATGCTCTGGATTCCACATCCCGTATGCTTTCTCCGCACA
TTTTGGGCGAGGAACACTACAACACTGCTCGTGGTGTGCAGAATGTTCTT
CACAACTGACAGAATCTCGCACATATGATCGCCATCTGGGGTATGGATGA
CCTTAGTGAACATGACGAGTTCACTGTTCCTCGACCACCTAAGATCCACG
GTTCTTGACCCACCCTTCCATGTGGGGGAAGTTTTCACAGGTGCCCTGCC
CAGTATGTGAGTTGAATGAGACCATGGCGGTCTCCCGGCAGTGTCGGATG
GACAGAGGAGCAGCGGAAGAGAGCGCTCTACGTGATGGGGAGGCCCACGA
GCCAACGCGGCGCCCCCACCATCCACCCACCCCACTCCCATCCCCCCCCC
GCACCCGCCAACCGCCCCTCAGCGCCCCCCCCCGGGCCGGGGCAGCGTCC
CCCCTGGGCGGCCCACGCGGCTCCTGGGATCCCCGCCACGCGCCCGAGCT
CGGGCCGCGGGCGCGGCCGGCGGGGCGCGGGGCACCGGCGGCGGGGGNTN
TGAGAGGAGGGAAGGGGGTGGGGGGGTCGCGCGGCGCC