EY756345

Overview
NameEY756345
Unique NameEY756345
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length509
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1118 contig Csv1_Contig1118:579..1087. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756345 vs. ExPASy Swiss-Prot
Match: SECY_METJA (Preprotein translocase subunit secY OS=Methanocaldococcus jannaschii GN=secY PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 3.394e-16
Identity = 38/116 (32.76%), Postives = 66/116 (56.90%), Query Frame = 1
Query:   16 ANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHTYSN--LQKELNRNIPTAAAFGGVCIGALTVLDDFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 357
            ++P HA+ Y++ M+  C +F   W+E +G   + +AK++    M + G   S   ++  L R IP         +G L  + +F+GA+G GTG+LL V+I+Y+ +E   +E+ SEL
Sbjct:  311 SDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIGALGGGTGVLLTVSIVYRMYEQLLREKVSEL 426          
BLAST of EY756345 vs. ExPASy Swiss-Prot
Match: SECY_ARCFU (Preprotein translocase subunit secY OS=Archaeoglobus fulgidus GN=secY PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.753e-15
Identity = 44/114 (38.60%), Postives = 68/114 (59.65%), Query Frame = 1
Query:   28 HALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHTYSN--LQKELNRNIPTAAAFGGVCIGALTVLDDFMGAIG--SGTGILLAVTIIYQYFETFEKERASEL 357
            H L   + ++    +F+  W+E SG  AR VA Q+ +  M +PG   S   L++ L+R IP     GG  IG LT++ + +G IG  SGTG+LLAV+I Y+++E   KE+ +E+
Sbjct:  368 HLLIDALILVVGGIIFAWFWVETSGMDARTVASQIAKSGMQVPGFRKSPQVLERVLSRYIPKVTILGGAIIGILTLVANMLGTIGNVSGTGLLLAVSIAYRFYEDLAKEQLTEM 481          
BLAST of EY756345 vs. ExPASy Swiss-Prot
Match: SECY_HALVO (Preprotein translocase subunit secY OS=Halobacterium volcanii GN=secY PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.825e-13
Identity = 37/111 (33.33%), Postives = 64/111 (57.66%), Query Frame = 1
Query:   34 LFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHTYSN--LQKELNRNIPTAAAFGGVCIGALTVLDDFMGAIG-SGTGILLAVTIIYQYFETFEKERASEL 357
            L  L+FM+   A+F+  W+E +G   +  A+Q++   M +PG   +   +++ + R IP     GG  +G L V+ + +G IG SGTG+LL V+I Y+ +E   +E+  E+
Sbjct:  367 LIDLIFMIVGGAVFAIFWVETTGMGPKSTAQQIQNSGMQIPGFRRNPQVIERVMERYIPQVTVIGGALVGLLAVMANMLGTIGASGTGLLLTVSITYKLYEEIAEEQLMEM 477          
BLAST of EY756345 vs. ExPASy Swiss-Prot
Match: SSH1_YEAST (Sec sixty-one protein homolog OS=Saccharomyces cerevisiae GN=SSH1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.517e-11
Identity = 34/94 (36.17%), Postives = 52/94 (55.32%), Query Frame = 1
Query:   22 PFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHTYSNLQKELNRNIPTAAAFGGVCIGALTVLDDFMGAIGSGTGILLAV 303
            P   + Y  F+L     F+  W  +SGSSARDVA + K+Q + + G    N+ KELN+ IP AA  G   +  +TV+ + +G  G   GI++ +
Sbjct:  364 PLTFITYSAFILVTGIWFADKWQAISGSSARDVALEFKDQGITLMGRREQNVAKELNKVIPIAAVTGASVLSLITVIGESLGLKGKAAGIVVGI 457          
BLAST of EY756345 vs. ExPASy Swiss-Prot
Match: SECY_HALMA (Preprotein translocase subunit secY OS=Haloarcula marismortui GN=secY PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.517e-11
Identity = 38/109 (34.86%), Postives = 57/109 (52.29%), Query Frame = 1
Query:   43 LVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPG--HTYSNLQKELNRNIPTAAAFGGVCIGALTVLDDFMGAIG--SGTGILLAVTIIYQYFETFEKERASEL 357
            L  ML   A+F+  W+E +       AKQ+    M +PG       ++K L R IP     GG  +G L V+ + +G IG  SGTG+LL V+I Y+ +E   +E+  E+
Sbjct:  370 LFVMLVGGAVFAVFWVETTDMGPEATAKQIHNSGMQIPGFRQNVGVIEKVLERYIPQVTVIGGALVGLLAVMANMLGTIGGVSGTGLLLTVSITYKLYEEIAEEQLMEM 478          
BLAST of EY756345 vs. ExPASy Swiss-Prot
Match: SECY_HALSA (Preprotein translocase subunit secY OS=Halobacterium salinarium GN=secY PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.294e-11
Identity = 35/109 (32.11%), Postives = 60/109 (55.05%), Query Frame = 1
Query:   43 LVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHTYSN--LQKELNRNIPTAAAFGGVCIGALTVLDDFMGAIG--SGTGILLAVTIIYQYFETFEKERASEL 357
            L FM+   A+F+  W+E +       A+Q++   M +PG   +   ++K + R IP     GG  +G L V+ + +G IG  SGTG+LL ++I Y+ +E   +E+  E+
Sbjct:  371 LSFMIIGGAIFAIFWVETADMGPDATARQIQNSGMQIPGFRKNQGVIEKVMERYIPQVTVIGGALVGLLAVMANMLGTIGNVSGTGLLLTISITYKLYEEIAEEQMMEM 479          
BLAST of EY756345 vs. ExPASy Swiss-Prot
Match: SECY_SULSO (Preprotein translocase subunit secY OS=Sulfolobus solfataricus GN=secY PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.324e-11
Identity = 40/115 (34.78%), Postives = 59/115 (51.30%), Query Frame = 1
Query:   19 NPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPG--HTYSNLQKELNRNIPTAAAFGGVCIGALTVLDDFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 357
            +P  AL Y V  +    LF   W++V+G      A+QL E  + +PG  +    ++  L R I   A F  + +G + V    +GA G+G GILLAVTI  QY+     ER+ E+
Sbjct:  345 DPLGALEYAVVFIVLSILFGILWVDVAGLDPATQAQQLVEAGIEIPGVRNNPKIIEGILARYIYPLAFFSSIIVGLIAVFATLLGAYGTGIGILLAVTIAIQYYSLLAYERSLEM 459          
The following BLAST results are available for this feature:
BLAST of EY756345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
SECY_METJA3.394e-1632.76Preprotein translocase subunit secY OS=Methanocald... [more]
SECY_ARCFU3.753e-1538.60Preprotein translocase subunit secY OS=Archaeoglob... [more]
SECY_HALVO7.825e-1333.33Preprotein translocase subunit secY OS=Halobacteri... [more]
SSH1_YEAST2.517e-1136.17Sec sixty-one protein homolog OS=Saccharomyces cer... [more]
SECY_HALMA2.517e-1134.86Preprotein translocase subunit secY OS=Haloarcula ... [more]
SECY_HALSA4.294e-1132.11Preprotein translocase subunit secY OS=Halobacteri... [more]
SECY_SULSO7.324e-1134.78Preprotein translocase subunit secY OS=Sulfolobus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-E09-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756345 ID=EY756345; Name=EY756345; organism=Citrus sinensis; type=EST; length=509bp
CCACGCGTCCGGGCAGCCAATCCTTTCCATGCTCTGTTCTACCTGGTTTT
TATGCTTACTGCTTGTGCTCTTTTCTCGAAAACTTGGATTGAAGTTTCAG
GGTCTTCTGCCCGGGATGTGGCCAAGCAGCTTAAGGAGCAACAAATGGTG
ATGCCTGGACATACATACTCAAATCTTCAAAAGGAACTGAACCGGAACAT
ACCAACTGCTGCTGCCTTTGGGGGAGTGTGCATTGGTGCATTAACAGTCC
TGGATGATTTCATGGGAGCAATTGGGTCAGGAACTGGGATATTGCTCGCA
GTTACGATCATATATCAGTACTTTGAGACCTTTGAGAAGGAGAGAGCTAG
CGAACTTGGCTTCTTTGGCTTTTAATACACCAATGATCTTGAGTTTCAGA
TTACCTGGTGAGTAATATTGGGCAATATTGTTGCAGAATTCAAAGACTTA
ACATAGGCCATGGCTTGTTAACACCTATGAATAGAGATTCAGATCAGTCT
GTAGTTTGG
back to top