EY756321

Overview
NameEY756321
Unique NameEY756321
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756321_ssr332 microsatellite EY756321_ssr332:332..343. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9569 contig Csv1_Contig9569:1118..1645. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756321 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.495e-20
Identity = 44/76 (57.89%), Postives = 58/76 (76.32%), Query Frame = 3
Query:   84 MQIFVKTLTGXTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 311
            M I VKTLTG  I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGG 76          
BLAST of EY756321 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 6.155e-19
Identity = 45/74 (60.81%), Postives = 57/74 (77.03%), Query Frame = 3
Query:   90 IFVKTLTGXTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 311
            I VKTLTG  I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DY I+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGG 76          
BLAST of EY756321 vs. ExPASy Swiss-Prot
Match: NEDD8_RAT (NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.989e-18
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 3
Query:   84 MQIFVKTLTGXTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 311
            M I VKTLTG  I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of EY756321 vs. ExPASy Swiss-Prot
Match: NEDD8_RABIT (NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.989e-18
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 3
Query:   84 MQIFVKTLTGXTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 311
            M I VKTLTG  I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of EY756321 vs. ExPASy Swiss-Prot
Match: NEDD8_MOUSE (NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 3.989e-18
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 3
Query:   84 MQIFVKTLTGXTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 311
            M I VKTLTG  I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of EY756321 vs. ExPASy Swiss-Prot
Match: NEDD8_HUMAN (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.989e-18
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 3
Query:   84 MQIFVKTLTGXTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 311
            M I VKTLTG  I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of EY756321 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.989e-18
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 3
Query:   84 MQIFVKTLTGXTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 311
            M I VKTLTG  I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of EY756321 vs. ExPASy Swiss-Prot
Match: RUB3_ORYSJ (NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.210e-18
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 3
Query:   84 MQIFVKTLTGXTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 311
            + + V+TLTG  I +++E +DT+D +K +++++EGIPP QQRLI+ GKQL D +T  DY I+  S LHLVL LRGG
Sbjct:    1 LNVKVRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLALRGG 76          
BLAST of EY756321 vs. ExPASy Swiss-Prot
Match: RUB3_ARATH (NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN=RUB3 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.377e-17
Identity = 41/76 (53.95%), Postives = 56/76 (73.68%), Query Frame = 3
Query:   84 MQIFVKTLTGXTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 311
            M+I VKTLT   I +E+E +DTI+ +K +I++KEGIPP  QR+++ GKQL D  T   YN+++ S LHLVL LRGG
Sbjct:    1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76          
BLAST of EY756321 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 7.523e-17
Identity = 40/76 (52.63%), Postives = 56/76 (73.68%), Query Frame = 3
Query:   84 MQIFVKTLTGXTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 311
            M I VKTLTG  I ++++ +D I  +K ++++KEGIPP QQRLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGG 76          
The following BLAST results are available for this feature:
BLAST of EY756321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
NEDD8_DROME9.495e-2057.89NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]
RUB2_ARATH6.155e-1960.81NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN... [more]
NEDD8_RAT3.989e-1855.26NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1[more]
NEDD8_RABIT3.989e-1855.26NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1[more]
NEDD8_MOUSE3.989e-1855.26NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2[more]
NEDD8_HUMAN3.989e-1855.26NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1[more]
NEDD8_BOVIN3.989e-1855.26NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1[more]
RUB3_ORYSJ5.210e-1852.63NEDD8-like protein RUB3 OS=Oryza sativa subsp. jap... [more]
RUB3_ARATH3.377e-1753.95NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN... [more]
NEDD8_DICDI7.523e-1752.63NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-C07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756321 ID=EY756321; Name=EY756321; organism=Citrus sinensis; type=EST; length=529bp
CCACGCGTCCGATGTATGATTAAACTAGAGTACATTTTTAGAGCTTTCCA
CTCTTCACTTGGTTCTTCGCCTCCGTGGTGGTAATGCAGATTTTTGTGAA
GACACTCACTGGGNAAACCATCACATTGGAGGTTGAGAGTTCGGACACAA
TTGACAATGTGAAGGCTAAGATCCAGGATAAGGAGGGGATTCCCCCAGAC
CAGCAGAGGTTGATCTTTGCTGGAAAACAACTTGAGGATGGAAGGACTCT
TGCTGATTACAACATCCAGAAGGAGTCCACTCTGCATCTTGTGCTCCGTC
TCCGTGGAGGTTTCTGAGTTTGGTCATCTGGGTGTGTGTGTGTCTTATTT
GCTTCGGTTTGTCTTGGTTAATGTTTGCTTGCTATTGGTGAAATGGCTTA
AATAACTATTTGAAGTTTATTTTGGTTGTGGTAGTTGAACTCTGTTTCTA
AGATATTGATATGGTCCCACTAACGTCCCATTATAATATCTAAGAATCTT
TTTCTTGAATAAATACATGTTTAATGTGC
back to top