EY732176

Overview
NameEY732176
Unique NameEY732176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_HALLT (Probable lipoyl synthase OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=lipA PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.232e-40
Identity = 76/152 (50.00%), Postives = 103/152 (67.76%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVASQG 770
            W+K   P G ++ +IK++LRE  LHTVCEEA CPN+GECWSG + G  TAT M++GD C+RGC FC+V+T             NVA+A+A  GLDYVV+T VDRDDL D GS HFA+T+R+++   P +L+E L PDF+G+   +  +   G
Sbjct:   10 WLKSRPPSGSRFTEIKERLRERDLHTVCEEANCPNMGECWSGRD-GPGTATFMLMGDRCSRGCNFCDVETG-GMKSLDSDEPENVADAVAEIGLDYVVLTSVDRDDLADGGSEHFAETIREIQRRDPEILVETLIPDFQGDPEAIDRIIDAG 159          

HSP 2 Score: 22.3274 bits (46), Expect = 2.232e-40
Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = 2
Query:  773 NVFAHNLERVEELQ 814
            +V AHN+E VE LQ
Sbjct:  161 DVIAHNVETVERLQ 174          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_NATPD (Probable lipoyl synthase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=lipA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.754e-39
Identity = 76/148 (51.35%), Postives = 102/148 (68.92%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREV 758
            W++   P G ++ +IK+ LR+  L+TVCEEA CPNLG+CWSG + G  TAT M+LGD C+RGC FC+V T             NVAEA+A  GLDYVV+T VDRDDL D G+GHFA+T+R++K    ++L+EAL PDF+G+   V  +
Sbjct:   10 WLRTRPPSGRRFTEIKETLRDRDLNTVCEEANCPNLGDCWSGRD-GPGTATFMLLGDRCSRGCNFCDVATG-GMDPLDPDEPANVAEAVAEIGLDYVVLTSVDRDDLDDGGAGHFAETIREIKRRDTSVLVEALIPDFQGDTDAVDRI 155          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_THET8 (Lipoyl synthase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=lipA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.308e-38
Identity = 76/148 (51.35%), Postives = 96/148 (64.86%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREV 758
            W+K  +P G +Y  +K  +REL+LHTVC+EA CPN+GECW+ G     T T+MILGD CTR C+FC V T              VAEAIA  G+ YVV+T VDRDDL D G+ HFA T+R +KE  P +L+EAL PDF+G+   V  V
Sbjct:   42 WIKAPLPTGPRYQALKAMVRELRLHTVCQEALCPNIGECWTHG-----TLTVMILGDICTRACKFCAVHTGNPKGLVDPEEPRRVAEAIARMGVRYVVLTSVDRDDLPDGGASHFAATIRAIKERAPGVLVEALTPDFQGDLKAVETV 184          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_THET2 (Lipoyl synthase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=lipA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.308e-38
Identity = 76/148 (51.35%), Postives = 96/148 (64.86%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREV 758
            W+K  +P G +Y  +K  +REL+LHTVC+EA CPN+GECW+ G     T T+MILGD CTR C+FC V T              VAEAIA  G+ YVV+T VDRDDL D G+ HFA T+R +KE  P +L+EAL PDF+G+   V  V
Sbjct:   42 WIKAPLPTGPRYQALKAMVRELRLHTVCQEALCPNIGECWTHG-----TLTVMILGDICTRACKFCAVHTGNPKGLVDPEEPRRVAEAIARMGVRYVVLTSVDRDDLPDGGASHFAATIRAIKERAPGVLVEALTPDFQGDLKAVETV 184          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_SORC5 (Lipoyl synthase OS=Sorangium cellulosum (strain So ce56) GN=lipA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.186e-37
Identity = 77/152 (50.66%), Postives = 96/152 (63.16%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVASQG 770
            W+K   PGGD Y  +K+  R+L LHTVCEEA+CPN+GECW  G     TAT+M+LGD CTRGCRFC V T             +VA AIA   L YVV+T V+RDDL D G+ H A+TV +L  L+P++LIE L  DF+G+   V  V   G
Sbjct:   10 WLKVRAPGGDTYHHLKETFRKLDLHTVCEEARCPNVGECWREG-----TATVMLLGDVCTRGCRFCAVTTGDPRGAVDVREPEHVARAIARLSLQYVVMTMVNRDDLLDGGAEHVARTVSRLHALRPDLLIETLVGDFQGHMSAVDMVVDAG 156          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_DEIRA (Lipoyl synthase OS=Deinococcus radiodurans GN=lipA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.200e-36
Identity = 73/152 (48.03%), Postives = 96/152 (63.16%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVASQG 770
            W+K +IP G  + +++K ++E +LHTVCEEA CPN+GECWS G     TAT M++G  CTR CRFC V T             +VA+++    L YVV+T VDRDDL D G+ HFA+TV+ +KE+ P   +EAL PDF GN  CV  V   G
Sbjct:   33 WLKVTIPTGQVFTEVRKIVKEHRLHTVCEEAMCPNIGECWSRG-----TATFMLMGHICTRACRFCAVDTGNPMGKLDLDEPRSVADSVRLMDLKYVVLTSVDRDDLPDGGAYHFAKTVKAIKEVNPQTRVEALTPDFGGNTACVDLVLDSG 179          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_DEIGD (Lipoyl synthase OS=Deinococcus geothermalis (strain DSM 11300) GN=lipA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.491e-36
Identity = 75/152 (49.34%), Postives = 94/152 (61.84%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVASQG 770
            W+K +IP G  Y +++K ++E +LHTVCEEA CPN+GECWS G     TAT M++G  CTR CRFC V T             +VAE++   GL YVV+T VDRDDL D G+ HFA+TV  +K   P   +EAL PDF GN  CV  V   G
Sbjct:   30 WLKVTIPTGQVYGEVRKIVKEHRLHTVCEEAMCPNIGECWSRG-----TATFMLMGHICTRACRFCAVDTGNPMGKLDLEEPAHVAESVRLMGLKYVVLTSVDRDDLPDGGAYHFAKTVTAIKRENPGTRVEALTPDFGGNPHCVDLVLESG 176          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_HALHL (Lipoyl synthase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=lipA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.092e-34
Identity = 72/152 (47.37%), Postives = 91/152 (59.87%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVASQG 770
            W+K   PGG+ Y  ++  + +  L TVCEE+ CPNLGECWS G     TAT M+LG  CTR CRFC+V T             + AE++   GL YVV+T VDRDDL D G+ H+AQ VR +K   P+  +EAL PDFRG+   VR V   G
Sbjct:   44 WLKARAPGGEGYRSVRGIVHDHHLSTVCEESHCPNLGECWSHG-----TATFMVLGSVCTRTCRFCSVDTGNPKGRLDPQEPEHCAESVRLMGLRYVVLTSVDRDDLPDGGAEHYAQCVRAIKADNPDTAVEALTPDFRGDEEAVRTVVDSG 190          

HSP 2 Score: 21.9422 bits (45), Expect = 2.092e-34
Identity = 10/16 (62.50%), Postives = 11/16 (68.75%), Query Frame = 2
Query:  764 SRLNVFAHNLERVEEL 811
            S L VFAHN+E V  L
Sbjct:  189 SGLEVFAHNVEVVRRL 204          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_ANAPZ (Lipoyl synthase OS=Anaplasma phagocytophilum (strain HZ) GN=lipA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.267e-34
Identity = 69/150 (46.00%), Postives = 97/150 (64.67%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVAS 764
            W++  +PGG+ + +++  ++  +L+TVCEEA CPN+GECW+        ATIM++GD CTR C FCNVKT              V EAI+  GL +VVIT VDRDDL D G+ HFA+ +R++++  PN+ IE L PDF+G  G V  +AS
Sbjct:    7 WLRVKMPGGEVFEEVRDLVKRQRLNTVCEEAACPNIGECWNKRH-----ATIMVMGDVCTRACAFCNVKTG-VPRALDLGEPERVGEAISKLGLKHVVITSVDRDDLPDGGASHFAKCIREIRKRDPNVTIEILTPDFQGKPGAVDVIAS 150          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_PSEMY (Lipoyl synthase OS=Pseudomonas mendocina (strain ymp) GN=lipA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.241e-33
Identity = 65/152 (42.76%), Postives = 92/152 (60.53%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVASQG 770
            W++   PGG ++  +K+ + E +L TVC+E+ CPN+GECWS G     TATIM++G  CTR CRFC V T             N A+++    L Y+V+T VDRDDL D G+ H+A  VR +KE  P +++EAL PDF G++  +  V   G
Sbjct:   46 WLRVKAPGGSRFEAVKRNVGEHRLSTVCQESHCPNMGECWSNG-----TATIMLMGSVCTRACRFCAVDTGNPNGWLDLEEPQNTAKSVELMALRYIVLTSVDRDDLEDGGASHYAACVRAIKENTPQVVVEALTPDFDGDHQAIERVVDSG 192          
The following BLAST results are available for this feature:
BLAST of EY732176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_HALLT2.232e-4050.00Probable lipoyl synthase OS=Halorubrum lacusprofun... [more]
LIPA_NATPD5.754e-3951.35Probable lipoyl synthase OS=Natronomonas pharaonis... [more]
LIPA_THET88.308e-3851.35Lipoyl synthase OS=Thermus thermophilus (strain HB... [more]
LIPA_THET28.308e-3851.35Lipoyl synthase OS=Thermus thermophilus (strain HB... [more]
LIPA_SORC59.186e-3750.66Lipoyl synthase OS=Sorangium cellulosum (strain So... [more]
LIPA_DEIRA1.200e-3648.03Lipoyl synthase OS=Deinococcus radiodurans GN=lipA... [more]
LIPA_DEIGD3.491e-3649.34Lipoyl synthase OS=Deinococcus geothermalis (strai... [more]
LIPA_HALHL2.092e-3447.37Lipoyl synthase OS=Halorhodospira halophila (strai... [more]
LIPA_ANAPZ3.267e-3446.00Lipoyl synthase OS=Anaplasma phagocytophilum (stra... [more]
LIPA_PSEMY1.241e-3342.76Lipoyl synthase OS=Pseudomonas mendocina (strain y... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-056-G07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY732176 ID=EY732176; Name=EY732176; organism=Citrus sinensis; type=EST; length=834bp
CCACGCGTCCGCACAATCTCTAATTTTCTCTCTCTAAAGCTTCCCAGCCA
CCAGAGAGAGAAAAAAAATCGGCCATGCGATCGCGGTTCACATTAGCCCT
AGCTCGCACTTTAACAAGCAGAACGAGACCGTTTTCATCGTCAGCACAAA
CCCCACCAACCGAACGGCCCACCAAATTCCCCCAAACTCTCGCGGGCCTC
CGTGCCCGCCTGGCCTCCGAGTCACCCGCCCTCTCCGATTTCATCGACCT
CCAAAGCAACAGTTCGTACTCCGTCGAAGTTGGAACCAAAAAGAAGCCCC
TTCCCAAGCCCAAATGGATGAAGGAATCGATCCCCGGCGGCGATAAATAC
GTTCAGATTAAGAAAAAATTGCGCGAGTTGAAGCTTCACACTGTTTGTGA
AGAGGCCAAGTGCCCAAATTTGGGGGAGTGTTGGTCTGGCGGCGAGACGG
GCACTGCAACGGCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGT
TGCAGGTTTTGCAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCC
AGACGAGCCTACTAATGTTGCTGAGGCAATTGCGTCCTGNGGTTTGGATT
ATGTGGTGATTACTANTGTTGATAGAGATGATTTANCTGATCAGGGAAGT
GGGCATTTTGCTCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATAT
GCTTATTGAAGCATTGGGTCCTGATTTTCGCGGGAACAACGGGTGTGTCC
GGGAAGTTGCCAGTCAAGGTTGAATGTCTTTGCTCATAATTTGGAAAGGG
TGGAAGAGCTTCAAGTGGGGTGAGGGGATACGTT
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