EY732176

Overview
NameEY732176
Unique NameEY732176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_PSEPF (Lipoyl synthase OS=Pseudomonas fluorescens (strain Pf0-1) GN=lipA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.373e-32
Identity = 82/202 (40.59%), Postives = 111/202 (54.95%), Query Frame = 3
Query:  159 TERPTKFPQTLAGLRARLASESPALSDFIDLQSNSSYSVEVGTXXXXXXXXXWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVAS 764
            TERP   P+  AG++ R A +   +             V++           W++  IP   +  +IK  LR+ KLH+VCEEA CPNLGEC+SGG     TAT MI+GD CTR C FC+V   R          + +A AIA   L YVVIT VDRDDL D G+ HFA  +R++++L PN+ +E L PD+RG      E+ +
Sbjct:   16 TERPAPRPKVEAGVKLRGAEKVARIP------------VKIIPTTELPKKPDWIRVRIPVSPEVDRIKSLLRKHKLHSVCEEASCPNLGECFSGG-----TATFMIMGDICTRRCPFCDVGHGRPKPLDVNEPES-LAIAIADLKLKYVVITSVDRDDLRDGGAQHFADCIREIRKLSPNVQLETLVPDYRGRMDIALEITA 199          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_NOVAD (Lipoyl synthase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=lipA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.373e-32
Identity = 70/139 (50.36%), Postives = 87/139 (62.59%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFR 731
            W++   P    Y + +  +REL L+TVCEEA CPN+GECW+        AT+MILGD CTR C FCNVKT             NVA A A  GL+++VIT VDRDDL D G+GHF + ++ L+EL PN  IE L PDFR
Sbjct:   18 WIRVKAPTSKGYGETRALMRELGLNTVCEEAACPNIGECWTKKH-----ATVMILGDVCTRACAFCNVKTGMPRAVDPMEPI-NVATAAAKMGLEHIVITSVDRDDLPDGGAGHFVKVIKALRELTPNTTIEILTPDFR 150          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_SULAC (Probable lipoyl synthase OS=Sulfolobus acidocaldarius GN=lipA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.439e-32
Identity = 68/143 (47.55%), Postives = 90/143 (62.94%), Query Frame = 3
Query:  342 DKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVASQG 770
            + + ++ + + E  + TVCEEA CPN+ ECW     G+ TAT MI+GD CTRGCRFC VK  +            VAEA+   GLDYVVIT VDRDDL D G+ HF+Q V+ +KE+ P++++E L PDF GN   V +V   G
Sbjct:   11 ENFKKLSRIVSEKGISTVCEEALCPNIMECW-----GSGTATFMIMGDICTRGCRFCYVKKGKPVLLDHEEPI-KVAEAVREMGLDYVVITSVDRDDLADGGASHFSQVVKAVKEMNPDVIVEVLTPDFMGNKELVEKVIGSG 147          

HSP 2 Score: 21.9422 bits (45), Expect = 2.439e-32
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = 2
Query:  764 SRLNVFAHNLERVEEL 811
            S ++VFAHN+E V  L
Sbjct:  146 SGVDVFAHNVETVRSL 161          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_CHRVO (Lipoyl synthase OS=Chromobacterium violaceum GN=lipA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.058e-32
Identity = 70/151 (46.36%), Postives = 95/151 (62.91%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVASQ 767
            W++  +P G ++ +IK+ LRE KLHTVCEEA CPN+GEC+S G     TAT MI+GD CTR C FC+V   R           ++AE++A+  L YVV+T VDRDDL D G+ HFA  +  ++E+ P   IE L PDFRG      ++ +Q
Sbjct:   36 WIRAKLPNGQRFHEIKQILREQKLHTVCEEATCPNIGECFSKG-----TATFMIMGDICTRRCPFCDVGHGRPNPLDENEPR-HLAESVAAMRLKYVVVTSVDRDDLRDGGAQHFADCINAVREMSPATQIETLVPDFRGRLDIAVDILTQ 180          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_BEII9 (Lipoyl synthase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=lipA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.058e-32
Identity = 69/150 (46.00%), Postives = 92/150 (61.33%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVAS 764
            W++   PG  ++V+ +K ++E KL TVCEEA CPN+GECW+        AT MI+GDTCTR C FCNVKT             ++A+A+   GL +VVIT VDRDDL D G+ HFAQ +R ++E  P   IE L PDF   +G +  V +
Sbjct:   39 WIRVKAPGSPEWVETQKIVKEHKLVTVCEEAGCPNIGECWAKKH-----ATFMIMGDTCTRACAFCNVKTG-LPNGLDPHEPAHIADAVQKLGLSHVVITSVDRDDLADGGAEHFAQVIRAIREASPKTTIEVLTPDFLRKDGALEIVVA 182          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_RICTY (Lipoyl synthase OS=Rickettsia typhi GN=lipA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.994e-32
Identity = 69/150 (46.00%), Postives = 89/150 (59.33%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVAS 764
            W+K   P   +Y   K  ++ L+L+TVCEEA CPN+GECWS        AT+MILG  CTR CRFCNVKT R            +AEA+    L++VVIT VDRDDL D G+ HFA+ + +++   PN  IE L PDF    G V  +A+
Sbjct:   10 WIKVKAPNSAEYYNTKDLIKNLRLNTVCEEAACPNIGECWSRKH-----ATVMILGSVCTRACRFCNVKTGRPDLLDPHEPR-RLAEAVQKLNLNHVVITSVDRDDLEDGGASHFAECINEIRRSSPNTTIEILTPDFLRKAGAVEVIAN 153          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_BACTN (Lipoyl synthase OS=Bacteroides thetaiotaomicron GN=lipA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.994e-32
Identity = 67/140 (47.86%), Postives = 88/140 (62.86%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRG 734
            W+K +I   D+Y + K+ +    LHT+C   +CPN+GECW     G  TAT MI GD CTR C+FCN +T R          T+VAE+IA   LD+ V+T VDRDDL D G+GH+A T+R++K L P   IE L PDF+G
Sbjct:   10 WLKINIGANDRYTETKRIVDSHCLHTICSSGRCPNMGECW-----GKGTATFMIGGDICTRSCKFCNTQTGRPHPLDANEP-THVAESIALMKLDHAVVTSVDRDDLPDLGAGHWAHTIREIKRLNPQTTIEVLIPDFQG 143          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_LEGPL (Lipoyl synthase OS=Legionella pneumophila (strain Lens) GN=lipA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.125e-32
Identity = 66/141 (46.81%), Postives = 90/141 (63.83%), Query Frame = 3
Query:  348 YVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVASQG 770
            Y Q+K+++++ +L TVCEEAKCPN+ ECWS G     TATIM++G  CTR CRFC+V T             N AE +A   LDYVV+T V+RDDL D G+ H+A+T+R +K+  P   +EAL PDF+G+   V  +   G
Sbjct:   56 YSQVKEQVQKHRLATVCEEAKCPNISECWSHG-----TATIMLMGAVCTRACRFCSVDTGNPHGWLDAEEPENTAETVALMNLDYVVLTSVNRDDLPDGGANHYAKTIRAIKKRSPRTKVEALTPDFQGSERDVAVLLDSG 191          

HSP 2 Score: 21.9422 bits (45), Expect = 4.125e-32
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 2
Query:  764 SRLNVFAHNLERVEEL 811
            S L+VFA N+E VE L
Sbjct:  190 SGLDVFAQNVETVERL 205          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_RICPR (Lipoyl synthase OS=Rickettsia prowazekii GN=lipA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.216e-32
Identity = 69/150 (46.00%), Postives = 89/150 (59.33%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVAS 764
            W+K   P   +Y Q K  ++ L+L+TVCEEA CPN+G+CWS        AT+MILG  CTR CRFCNVKT R            +AEA+    L +VVIT VDRDDL D G+ HFA+ + +++   PN  IE L PDF    G V  +A+
Sbjct:   10 WIKVKAPNSVEYYQTKDLIKNLRLNTVCEEAACPNIGDCWSRKH-----ATVMILGAVCTRACRFCNVKTGRPDLLDPHEPR-RLAEAVQKLNLQHVVITSVDRDDLEDGGASHFAECINEIRRSSPNTTIEILTPDFLRKEGAVEIIAN 153          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_PSEPW (Lipoyl synthase OS=Pseudomonas putida (strain W619) GN=lipA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.216e-32
Identity = 73/151 (48.34%), Postives = 94/151 (62.25%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVASQ 767
            W++  IP   +  +IK+ LR+ KLH+VCEEA CPNLGEC+SGG     TAT MI+GD CTR C FC+V   R           N+A AIA   L YVVIT VDRDDL D G+ HFA  +R+++ L P + +E L PD+RG      E+ +Q
Sbjct:   57 WIRVRIPVSPEVDRIKQLLRKHKLHSVCEEASCPNLGECFSGG-----TATFMIMGDICTRRCPFCDVGHGRPKPLDVDEPK-NLAVAIADLRLKYVVITSVDRDDLRDGGAQHFADCIREIRALSPGVQLETLVPDYRGRMDVALEITAQ 201          
The following BLAST results are available for this feature:
BLAST of EY732176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_PSEPF1.373e-3240.59Lipoyl synthase OS=Pseudomonas fluorescens (strain... [more]
LIPA_NOVAD1.373e-3250.36Lipoyl synthase OS=Novosphingobium aromaticivorans... [more]
LIPA_SULAC2.439e-3247.55Probable lipoyl synthase OS=Sulfolobus acidocaldar... [more]
LIPA_CHRVO3.058e-3246.36Lipoyl synthase OS=Chromobacterium violaceum GN=li... [more]
LIPA_BEII93.058e-3246.00Lipoyl synthase OS=Beijerinckia indica subsp. indi... [more]
LIPA_RICTY3.994e-3246.00Lipoyl synthase OS=Rickettsia typhi GN=lipA PE=3 S... [more]
LIPA_BACTN3.994e-3247.86Lipoyl synthase OS=Bacteroides thetaiotaomicron GN... [more]
LIPA_LEGPL4.125e-3246.81Lipoyl synthase OS=Legionella pneumophila (strain ... [more]
LIPA_RICPR5.216e-3246.00Lipoyl synthase OS=Rickettsia prowazekii GN=lipA P... [more]
LIPA_PSEPW5.216e-3248.34Lipoyl synthase OS=Pseudomonas putida (strain W619... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-056-G07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY732176 ID=EY732176; Name=EY732176; organism=Citrus sinensis; type=EST; length=834bp
CCACGCGTCCGCACAATCTCTAATTTTCTCTCTCTAAAGCTTCCCAGCCA
CCAGAGAGAGAAAAAAAATCGGCCATGCGATCGCGGTTCACATTAGCCCT
AGCTCGCACTTTAACAAGCAGAACGAGACCGTTTTCATCGTCAGCACAAA
CCCCACCAACCGAACGGCCCACCAAATTCCCCCAAACTCTCGCGGGCCTC
CGTGCCCGCCTGGCCTCCGAGTCACCCGCCCTCTCCGATTTCATCGACCT
CCAAAGCAACAGTTCGTACTCCGTCGAAGTTGGAACCAAAAAGAAGCCCC
TTCCCAAGCCCAAATGGATGAAGGAATCGATCCCCGGCGGCGATAAATAC
GTTCAGATTAAGAAAAAATTGCGCGAGTTGAAGCTTCACACTGTTTGTGA
AGAGGCCAAGTGCCCAAATTTGGGGGAGTGTTGGTCTGGCGGCGAGACGG
GCACTGCAACGGCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGT
TGCAGGTTTTGCAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCC
AGACGAGCCTACTAATGTTGCTGAGGCAATTGCGTCCTGNGGTTTGGATT
ATGTGGTGATTACTANTGTTGATAGAGATGATTTANCTGATCAGGGAAGT
GGGCATTTTGCTCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATAT
GCTTATTGAAGCATTGGGTCCTGATTTTCGCGGGAACAACGGGTGTGTCC
GGGAAGTTGCCAGTCAAGGTTGAATGTCTTTGCTCATAATTTGGAAAGGG
TGGAAGAGCTTCAAGTGGGGTGAGGGGATACGTT
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