EY732176

Overview
NameEY732176
Unique NameEY732176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12112 contig Csv1_Contig12112:1..834. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_PSEPK (Lipoyl synthase OS=Pseudomonas putida (strain KT2440) GN=lipA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.216e-32
Identity = 73/151 (48.34%), Postives = 94/151 (62.25%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVASQ 767
            W++  IP   +  +IK+ LR+ KLH+VCEEA CPNLGEC+SGG     TAT MI+GD CTR C FC+V   R           N+A AIA   L YVVIT VDRDDL D G+ HFA  +R+++ L P + +E L PD+RG      E+ +Q
Sbjct:   57 WIRVRIPVSPEVDRIKQLLRKHKLHSVCEEASCPNLGECFSGG-----TATFMIMGDICTRRCPFCDVGHGRPKPLDLDEPK-NLAVAIADLRLKYVVITSVDRDDLRDGGAQHFADCIREIRALSPGVQLETLVPDYRGRMDVALEITAQ 201          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_PSEP1 (Lipoyl synthase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=lipA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.216e-32
Identity = 73/151 (48.34%), Postives = 94/151 (62.25%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVASQ 767
            W++  IP   +  +IK+ LR+ KLH+VCEEA CPNLGEC+SGG     TAT MI+GD CTR C FC+V   R           N+A AIA   L YVVIT VDRDDL D G+ HFA  +R+++ L P + +E L PD+RG      E+ +Q
Sbjct:   57 WIRVRIPVSPEVDRIKQLLRKHKLHSVCEEASCPNLGECFSGG-----TATFMIMGDICTRRCPFCDVGHGRPKPLDLDEPK-NLAVAIADLRLKYVVITSVDRDDLRDGGAQHFADCIREIRALSPGVQLETLVPDYRGRMDVALEITAQ 201          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_PSEAE (Lipoyl synthase OS=Pseudomonas aeruginosa GN=lipA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.216e-32
Identity = 73/150 (48.67%), Postives = 95/150 (63.33%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVAS 764
            W++  IP   +  +IK+ LR+ KLH+VCEEA CPNLGEC+SGG     TAT MI+GD CTR C FC+V   R          TN+A AIA   L YVVIT VDRDDL D G+ HFA  +R++++L P + +E L PD+RG      E+ +
Sbjct:   47 WIRVRIPVSPEVDRIKQLLRKHKLHSVCEEASCPNLGECFSGG-----TATFMIMGDICTRRCPFCDVGHGRPKPLDVDEP-TNLAIAIADLRLKYVVITSVDRDDLRDGGAQHFADCLREIRKLSPGIQLETLVPDYRGRMDIALEITA 190          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_PSEAB (Lipoyl synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=lipA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.216e-32
Identity = 73/150 (48.67%), Postives = 95/150 (63.33%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVAS 764
            W++  IP   +  +IK+ LR+ KLH+VCEEA CPNLGEC+SGG     TAT MI+GD CTR C FC+V   R          TN+A AIA   L YVVIT VDRDDL D G+ HFA  +R++++L P + +E L PD+RG      E+ +
Sbjct:   47 WIRVRIPVSPEVDRIKQLLRKHKLHSVCEEASCPNLGECFSGG-----TATFMIMGDICTRRCPFCDVGHGRPKPLDVDEP-TNLAIAIADLRLKYVVITSVDRDDLRDGGAQHFADCLREIRKLSPGIQLETLVPDYRGRMDIALEITA 190          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_PSEA8 (Lipoyl synthase OS=Pseudomonas aeruginosa (strain LESB58) GN=lipA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.216e-32
Identity = 73/150 (48.67%), Postives = 95/150 (63.33%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVAS 764
            W++  IP   +  +IK+ LR+ KLH+VCEEA CPNLGEC+SGG     TAT MI+GD CTR C FC+V   R          TN+A AIA   L YVVIT VDRDDL D G+ HFA  +R++++L P + +E L PD+RG      E+ +
Sbjct:   47 WIRVRIPVSPEVDRIKQLLRKHKLHSVCEEASCPNLGECFSGG-----TATFMIMGDICTRRCPFCDVGHGRPKPLDVDEP-TNLAIAIADLRLKYVVITSVDRDDLRDGGAQHFADCLREIRKLSPGIQLETLVPDYRGRMDIALEITA 190          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_PSEA7 (Lipoyl synthase OS=Pseudomonas aeruginosa (strain PA7) GN=lipA PE=3 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 5.216e-32
Identity = 73/150 (48.67%), Postives = 95/150 (63.33%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVAS 764
            W++  IP   +  +IK+ LR+ KLH+VCEEA CPNLGEC+SGG     TAT MI+GD CTR C FC+V   R          TN+A AIA   L YVVIT VDRDDL D G+ HFA  +R++++L P + +E L PD+RG      E+ +
Sbjct:   47 WIRVRIPVSPEVDRIKQLLRKHKLHSVCEEASCPNLGECFSGG-----TATFMIMGDICTRRCPFCDVGHGRPKPLDVDEP-TNLAIAIADLRLKYVVITSVDRDDLRDGGAQHFADCLREIRKLSPGIQLETLVPDYRGRMDIALEITA 190          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_EHRCR (Lipoyl synthase OS=Ehrlichia chaffeensis (strain Arkansas) GN=lipA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.216e-32
Identity = 67/149 (44.97%), Postives = 93/149 (62.42%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVA 761
            W+K  +P GD + Q++  ++  KL+TVCEEA CPN+GECW+        AT+MILG TCTR C FCNV  S            N+A+A+    L++VVIT VDRDDL D GSGHF + + ++++   N+ IE L PDF   +G + +VA
Sbjct:    7 WLKVKMPTGDTFYQVRNLMKLYKLNTVCEEAACPNIGECWNKRH-----ATVMILGSTCTRACAFCNV-VSGIPDKLDPHEPQNLAKAVGLLKLEHVVITSVDRDDLEDGGSGHFVECIEEIRKNDQNVTIEVLTPDFLNKHGAIEKVA 149          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_SILST (Lipoyl synthase OS=Silicibacter sp. (strain TM1040) GN=lipA PE=3 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 6.812e-32
Identity = 69/138 (50.00%), Postives = 85/138 (61.59%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDF 728
            W++   PGG  Y +  K +RE  L TVCEEA CPN+GECWS G      AT+MI+G+ CTRGC FCN+ T R            VA A+   GL++VVIT VDRDDL D G+ HFAQT+R ++   P   IE L PDF
Sbjct:   28 WIRVKAPGGKGYAETHKIMRENNLVTVCEEAGCPNVGECWSQGH-----ATMMIMGEICTRGCTFCNIATGRPDTLDAFEPG-RVAHAVQKLGLNHVVITSVDRDDLEDGGADHFAQTIRAVRHRSPQTTIEILTPDF 159          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_PSEFS (Lipoyl synthase OS=Pseudomonas fluorescens (strain SBW25) GN=lipA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.812e-32
Identity = 72/150 (48.00%), Postives = 95/150 (63.33%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVAS 764
            W++  IP   +  +IK  LR+ KLH+VCEEA CPNLGEC+SGG     TAT MI+GD CTR C FC+V   R          + +A AIA   L YVVIT VDRDDL D G+ HFA  +R++++L PN+++E L PD+RG      E+ +
Sbjct:   58 WIRVRIPVSPEVDRIKALLRKHKLHSVCEEASCPNLGECFSGG-----TATFMIMGDICTRRCPFCDVGHGRPKPLDVNEPES-LAIAIADLKLKYVVITSVDRDDLRDGGAQHFADCIREIRKLSPNVMLETLVPDYRGRMDVALEITA 201          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_PSEE4 (Lipoyl synthase OS=Pseudomonas entomophila (strain L48) GN=lipA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.812e-32
Identity = 73/151 (48.34%), Postives = 94/151 (62.25%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVASQ 767
            W++  IP   +  +IK+ LR+ KLH+VCEEA CPNLGEC+SGG     TAT MI+GD CTR C FC+V   R           N+A AIA   L YVVIT VDRDDL D G+ HFA  +R+++ L P + +E L PD+RG      E+ +Q
Sbjct:   57 WIRVRIPVSPEVDRIKQLLRKHKLHSVCEEASCPNLGECFSGG-----TATFMIMGDICTRRCPFCDVGHGRPKPLDLDEPK-NLAIAIADLRLKYVVITSVDRDDLRDGGAQHFADCIREIRALSPGVQLETLVPDYRGRMDVALEITAQ 201          
The following BLAST results are available for this feature:
BLAST of EY732176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_PSEPK5.216e-3248.34Lipoyl synthase OS=Pseudomonas putida (strain KT24... [more]
LIPA_PSEP15.216e-3248.34Lipoyl synthase OS=Pseudomonas putida (strain F1 /... [more]
LIPA_PSEAE5.216e-3248.67Lipoyl synthase OS=Pseudomonas aeruginosa GN=lipA ... [more]
LIPA_PSEAB5.216e-3248.67Lipoyl synthase OS=Pseudomonas aeruginosa (strain ... [more]
LIPA_PSEA85.216e-3248.67Lipoyl synthase OS=Pseudomonas aeruginosa (strain ... [more]
LIPA_PSEA75.216e-3248.67Lipoyl synthase OS=Pseudomonas aeruginosa (strain ... [more]
LIPA_EHRCR5.216e-3244.97Lipoyl synthase OS=Ehrlichia chaffeensis (strain A... [more]
LIPA_SILST6.812e-3250.00Lipoyl synthase OS=Silicibacter sp. (strain TM1040... [more]
LIPA_PSEFS6.812e-3248.00Lipoyl synthase OS=Pseudomonas fluorescens (strain... [more]
LIPA_PSEE46.812e-3248.34Lipoyl synthase OS=Pseudomonas entomophila (strain... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-056-G07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY732176 ID=EY732176; Name=EY732176; organism=Citrus sinensis; type=EST; length=834bp
CCACGCGTCCGCACAATCTCTAATTTTCTCTCTCTAAAGCTTCCCAGCCA
CCAGAGAGAGAAAAAAAATCGGCCATGCGATCGCGGTTCACATTAGCCCT
AGCTCGCACTTTAACAAGCAGAACGAGACCGTTTTCATCGTCAGCACAAA
CCCCACCAACCGAACGGCCCACCAAATTCCCCCAAACTCTCGCGGGCCTC
CGTGCCCGCCTGGCCTCCGAGTCACCCGCCCTCTCCGATTTCATCGACCT
CCAAAGCAACAGTTCGTACTCCGTCGAAGTTGGAACCAAAAAGAAGCCCC
TTCCCAAGCCCAAATGGATGAAGGAATCGATCCCCGGCGGCGATAAATAC
GTTCAGATTAAGAAAAAATTGCGCGAGTTGAAGCTTCACACTGTTTGTGA
AGAGGCCAAGTGCCCAAATTTGGGGGAGTGTTGGTCTGGCGGCGAGACGG
GCACTGCAACGGCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGT
TGCAGGTTTTGCAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCC
AGACGAGCCTACTAATGTTGCTGAGGCAATTGCGTCCTGNGGTTTGGATT
ATGTGGTGATTACTANTGTTGATAGAGATGATTTANCTGATCAGGGAAGT
GGGCATTTTGCTCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATAT
GCTTATTGAAGCATTGGGTCCTGATTTTCGCGGGAACAACGGGTGTGTCC
GGGAAGTTGCCAGTCAAGGTTGAATGTCTTTGCTCATAATTTGGAAAGGG
TGGAAGAGCTTCAAGTGGGGTGAGGGGATACGTT
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