EY732176

Overview
NameEY732176
Unique NameEY732176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_MYCUA (Lipoyl synthase OS=Mycobacterium ulcerans (strain Agy99) GN=lipA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.772e-25
Identity = 62/148 (41.89%), Postives = 83/148 (56.08%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREV 758
            W++     G +Y ++K  +R   LHTVCEEA CPN+ ECW   E     AT +I GD CTR C FC + T +            VAE++ + GL Y  +T V RDDL D G+  +A+TVR +KEL P+  +E L PDF G    + EV
Sbjct:   38 WIRTRARMGPEYTELKNLVRREGLHTVCEEAGCPNIFECWEDRE-----ATFLIGGDQCTRRCDFCQIDTGKPAPLDRDEPR-RVAESVHTMGLRYATVTGVARDDLPDGGAWLYAETVRAIKELNPSTGVELLIPDFNGKADQLGEV 179          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_MYCMM (Lipoyl synthase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=lipA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.772e-25
Identity = 62/148 (41.89%), Postives = 83/148 (56.08%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREV 758
            W++     G +Y ++K  +R   LHTVCEEA CPN+ ECW   E     AT +I GD CTR C FC + T +            VAE++ + GL Y  +T V RDDL D G+  +A+TVR +KEL P+  +E L PDF G    + EV
Sbjct:   38 WIRTRARMGPEYTELKNLVRREGLHTVCEEAGCPNIFECWEDRE-----ATFLIGGDQCTRRCDFCQIDTGKPAPLDRDEPR-RVAESVHTMGLRYATVTGVARDDLPDGGAWLYAETVRAIKELNPSTGVELLIPDFNGKADQLGEV 179          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_ACIC1 (Lipoyl synthase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=lipA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.772e-25
Identity = 62/150 (41.33%), Postives = 83/150 (55.33%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVAS 764
            W++     G +Y  +K+ +R   LHTVCEEA CPN+ ECW   E     AT +I GDTC+R C FC + + R            VAE++A  GL Y  +T V RDDL D+G+  +AQTVR++    P   +E L PDF G    + EV S
Sbjct:   29 WIRTRARMGPQYHALKELVRREGLHTVCEEAGCPNIFECWEDRE-----ATFLIGGDTCSRNCSFCQISSGRPQPLDRDEPR-RVAESVARMGLRYATVTGVTRDDLDDEGAWLYAQTVREIHHAVPGCGVELLTPDFHGRPELLDEVFS 172          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA2_GLOVI (Lipoyl synthase 2 OS=Gloeobacter violaceus GN=lipA2 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.772e-25
Identity = 58/150 (38.67%), Postives = 84/150 (56.00%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVAS 764
            W + +I    +   ++K +++  LHT+CEE +CPN  EC++       TAT +++G  CTR C FC V   +A           VAEA+A  GL YVV+T V RDDL DQG+G F +T+  ++     + IE L PDFRG   C+  V +
Sbjct:   16 WARRTIGTASQVSTVEKIVKQRSLHTICEEGRCPNRAECYA-----QKTATFLLMGPVCTRACGFCQVAGGKALPLDPQEPE-KVAEAVALLGLKYVVLTSVARDDLPDQGAGWFVRTMESIRARNCAVEIEVLTPDFRGEEACIATVVA 159          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA1_ANASP (Lipoyl synthase 1 OS=Anabaena sp. (strain PCC 7120) GN=lipA1 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.772e-25
Identity = 55/141 (39.01%), Postives = 83/141 (58.87%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGN 737
            W++   P  ++   +K+ LR+L L+TVCEEA CPN+GEC+  G     TAT +I+G  CTR C +C++   +          T +AEA+    L++VVIT V+RDDL D G+  F + + +++ + P   IE L PD  GN
Sbjct:    7 WLRVKAPQWERVGNVKEILRDLALNTVCEEASCPNIGECFQAG-----TATFLIMGPACTRACPYCDIDFEKKPKALDPTEPTRLAEAVRRMRLNHVVITSVNRDDLPDGGASQFVKCIAEVRAVSPQTTIEVLIPDLCGN 142          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_THICR (Lipoyl synthase OS=Thiomicrospira crunogena (strain XCL-2) GN=lipA PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.621e-25
Identity = 63/154 (40.91%), Postives = 89/154 (57.79%), Query Frame = 3
Query:  315 WMKESIPGGD---KYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVASQ 767
            W+K  +P      +  ++K+ LRE  L++VCEEA CPNLGEC+  G     TAT MI+G  CTR C FC+V   R           ++A+ I +  L+YVVIT VDRDDL D G+ HF    + +++  P++ IE L PDFRG      ++ +Q
Sbjct:   34 WIKAKLPSAKHIGRVKELKQVLREQGLNSVCEEASCPNLGECFGHG-----TATFMIMGHICTRKCPFCDVTHGRPNPLNQDEPR-HLAKTIHAMNLNYVVITSVDRDDLRDGGATHFKNCTQAIRDKMPDIQIETLVPDFRGRLTVALDILAQ 181          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA2_PROMA (Lipoyl synthase 2 OS=Prochlorococcus marinus GN=lipA2 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.033e-25
Identity = 55/148 (37.16%), Postives = 85/148 (57.43%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREV 758
            W+K S+    +  +++  ++E +L+T+CEE +CPN GEC++ G     TAT ++ G  CTR C FC V+               VA+A+    L YVV+T V RDDL D G+ HF++T+  +++  P   IE L PDF G  GC+ ++
Sbjct:   22 WIKPSLGTASQLEKVQNLVKEYRLNTICEEGRCPNRGECYASG-----TATFLLGGSICTRSCAFCQVEKGMPPQNIDPNESIRVAKAVLKLQLKYVVLTSVARDDLDDHGAIHFSRTIHAIRKTSPTTSIEVLTPDFWG--GCIDKI 162          

HSP 2 Score: 21.557 bits (44), Expect = 4.033e-25
Identity = 9/12 (75.00%), Postives = 9/12 (75.00%), Query Frame = 2
Query:  779 FAHNLERVEELQ 814
            F HNLE VE LQ
Sbjct:  183 FNHNLETVERLQ 194          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_MYCPA (Lipoyl synthase OS=Mycobacterium paratuberculosis GN=lipA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.729e-25
Identity = 61/148 (41.22%), Postives = 83/148 (56.08%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREV 758
            W++     G +Y ++K  +R   LHTVCEEA CPN+ ECW   E     AT +I GD CTR C FC + T +            VA+++ + GL Y  +T V RDDL D G+  +A+TVR +KEL P+  +E L PDF G    + EV
Sbjct:   28 WIRVRARMGPEYTELKSLVRREGLHTVCEEAGCPNIFECWEDRE-----ATFLIGGDQCTRRCDFCQIDTGKPAELDRDEPR-RVADSVRTMGLRYATVTGVARDDLPDGGAWLYAETVRAIKELNPSTGVELLIPDFNGRPDRLAEV 169          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_MYCA1 (Lipoyl synthase OS=Mycobacterium avium (strain 104) GN=lipA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.729e-25
Identity = 61/148 (41.22%), Postives = 83/148 (56.08%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREV 758
            W++     G +Y ++K  +R   LHTVCEEA CPN+ ECW   E     AT +I GD CTR C FC + T +            VA+++ + GL Y  +T V RDDL D G+  +A+TVR +KEL P+  +E L PDF G    + EV
Sbjct:   28 WIRVRARMGPEYTELKSLVRREGLHTVCEEAGCPNIFECWEDRE-----ATFLIGGDQCTRRCDFCQIDTGKPAELDRDEPR-RVADSVRTMGLRYATVTGVARDDLPDGGAWLYAETVRAIKELNPSTGVELLIPDFNGRPDRLAEV 169          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_DESDG (Lipoyl synthase OS=Desulfovibrio desulfuricans (strain G20) GN=lipA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.729e-25
Identity = 60/148 (40.54%), Postives = 84/148 (56.76%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREV 758
            W++  IP    Y   ++ + +L LHTVC+ AKCPN+ EC+S     + TAT +ILG TCTR C FCN++               VA A A   L +VVIT V RDDL D G+ HFA T++ ++   P   +E L PDF+G+   ++ V
Sbjct:   16 WLRTRIPCNRTYTATRELIGDLNLHTVCQSAKCPNMFECFS-----SRTATFLILGGTCTRNCAFCNIEPGDVLPPDAGEPQ-RVALAAARLELKHVVITSVTRDDLPDGGAAHFAATIQAVRSRLPRCTVEVLIPDFQGDAAALQTV 157          
The following BLAST results are available for this feature:
BLAST of EY732176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_MYCUA2.772e-2541.89Lipoyl synthase OS=Mycobacterium ulcerans (strain ... [more]
LIPA_MYCMM2.772e-2541.89Lipoyl synthase OS=Mycobacterium marinum (strain A... [more]
LIPA_ACIC12.772e-2541.33Lipoyl synthase OS=Acidothermus cellulolyticus (st... [more]
LIPA2_GLOVI2.772e-2538.67Lipoyl synthase 2 OS=Gloeobacter violaceus GN=lipA... [more]
LIPA1_ANASP2.772e-2539.01Lipoyl synthase 1 OS=Anabaena sp. (strain PCC 7120... [more]
LIPA_THICR3.621e-2540.91Lipoyl synthase OS=Thiomicrospira crunogena (strai... [more]
LIPA2_PROMA4.033e-2537.16Lipoyl synthase 2 OS=Prochlorococcus marinus GN=li... [more]
LIPA_MYCPA4.729e-2541.22Lipoyl synthase OS=Mycobacterium paratuberculosis ... [more]
LIPA_MYCA14.729e-2541.22Lipoyl synthase OS=Mycobacterium avium (strain 104... [more]
LIPA_DESDG4.729e-2540.54Lipoyl synthase OS=Desulfovibrio desulfuricans (st... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-056-G07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY732176 ID=EY732176; Name=EY732176; organism=Citrus sinensis; type=EST; length=834bp
CCACGCGTCCGCACAATCTCTAATTTTCTCTCTCTAAAGCTTCCCAGCCA
CCAGAGAGAGAAAAAAAATCGGCCATGCGATCGCGGTTCACATTAGCCCT
AGCTCGCACTTTAACAAGCAGAACGAGACCGTTTTCATCGTCAGCACAAA
CCCCACCAACCGAACGGCCCACCAAATTCCCCCAAACTCTCGCGGGCCTC
CGTGCCCGCCTGGCCTCCGAGTCACCCGCCCTCTCCGATTTCATCGACCT
CCAAAGCAACAGTTCGTACTCCGTCGAAGTTGGAACCAAAAAGAAGCCCC
TTCCCAAGCCCAAATGGATGAAGGAATCGATCCCCGGCGGCGATAAATAC
GTTCAGATTAAGAAAAAATTGCGCGAGTTGAAGCTTCACACTGTTTGTGA
AGAGGCCAAGTGCCCAAATTTGGGGGAGTGTTGGTCTGGCGGCGAGACGG
GCACTGCAACGGCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGT
TGCAGGTTTTGCAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCC
AGACGAGCCTACTAATGTTGCTGAGGCAATTGCGTCCTGNGGTTTGGATT
ATGTGGTGATTACTANTGTTGATAGAGATGATTTANCTGATCAGGGAAGT
GGGCATTTTGCTCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATAT
GCTTATTGAAGCATTGGGTCCTGATTTTCGCGGGAACAACGGGTGTGTCC
GGGAAGTTGCCAGTCAAGGTTGAATGTCTTTGCTCATAATTTGGAAAGGG
TGGAAGAGCTTCAAGTGGGGTGAGGGGATACGTT
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