EY732176

Overview
NameEY732176
Unique NameEY732176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_BUCAT (Lipoyl synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=lipA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.780e-23
Identity = 63/141 (44.68%), Postives = 80/141 (56.74%), Query Frame = 3
Query:  315 WMKESIP-GGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRG 734
            W+K  IP    +  QIK  LR+  L++VCEEA CPNL EC++ G     TAT MILG  CTR C FC V   R            +++ I   G++YVVIT V RDDL D G+ HF   ++ +K  K  + IE L PDFRG
Sbjct:   37 WIKIKIPVNTSRIYQIKNALRKNNLYSVCEEAHCPNLSECFNNG-----TATFMILGSICTRNCPFCAVFHGR-PNPVNVEEPQKLSDTIFDMGINYVVITSVVRDDLYDGGAEHFVNCIKAIKN-KNQVKIEILVPDFRG 170          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_BUCAI (Lipoyl synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=lipA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.780e-23
Identity = 63/141 (44.68%), Postives = 80/141 (56.74%), Query Frame = 3
Query:  315 WMKESIP-GGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRG 734
            W+K  IP    +  QIK  LR+  L++VCEEA CPNL EC++ G     TAT MILG  CTR C FC V   R            +++ I   G++YVVIT V RDDL D G+ HF   ++ +K  K  + IE L PDFRG
Sbjct:   37 WIKIKIPVNTSRIYQIKNALRKNNLYSVCEEAHCPNLSECFNNG-----TATFMILGSICTRNCPFCAVFHGR-PNPVNVEEPQKLSDTIFDMGINYVVITSVVRDDLYDGGAEHFVNCIKAIKN-KNQVKIEILVPDFRG 170          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_BUCA5 (Lipoyl synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=lipA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.780e-23
Identity = 63/141 (44.68%), Postives = 80/141 (56.74%), Query Frame = 3
Query:  315 WMKESIP-GGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRG 734
            W+K  IP    +  QIK  LR+  L++VCEEA CPNL EC++ G     TAT MILG  CTR C FC V   R            +++ I   G++YVVIT V RDDL D G+ HF   ++ +K  K  + IE L PDFRG
Sbjct:   37 WIKIKIPVNTSRIYQIKNALRKNNLYSVCEEAHCPNLSECFNNG-----TATFMILGSICTRNCPFCAVFHGR-PNPVNVEEPQKLSDTIFDMGINYVVITSVVRDDLYDGGAEHFVNCIKAIKN-KNQVKIEILVPDFRG 170          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA2_SYNPX (Lipoyl synthase 2 OS=Synechococcus sp. (strain WH8102) GN=lipA2 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.780e-23
Identity = 54/144 (37.50%), Postives = 80/144 (55.56%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGC 746
            W++  I       +++  +++ +LHT+CEE +CPN GEC++ G     TAT ++ G  CTR C FC V+  +A           VA+A+ +  L YVV+T V RDDL D G+  F  T+  ++   P + IE L PDF G  GC
Sbjct:   16 WLRRPIGDASALERVQGLVKQNRLHTICEEGRCPNRGECYAAG-----TATFLLGGSICTRSCAFCQVEKGQAPMAVDPAEAQRVADAVEAMQLRYVVLTAVARDDLADHGAALFTTTMEAIRARNPLIAIEVLTPDFWG--GC 152          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA2_PROMM (Lipoyl synthase 2 OS=Prochlorococcus marinus (strain MIT 9313) GN=lipA2 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.014e-23
Identity = 53/140 (37.86%), Postives = 78/140 (55.71%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRG 734
            W++  I    +  Q+++ ++   LHT+CEE +CPN GEC++ G     TAT ++ G  CTR C FC V   ++           VA+A+   GL YVV+T V RDDL D G   F +T+  +++  P + IE L PDF G
Sbjct:   22 WLRRPIGSVSQLEQMQQLVKGNHLHTICEEGRCPNRGECYAAG-----TATFLLGGSICTRSCAFCQVMKGQSPQAIDPLEAERVADAVQQMGLRYVVLTSVARDDLPDHGVSIFTETMAAIRQRNPLIEIEVLTPDFWG 156          

HSP 2 Score: 21.557 bits (44), Expect = 6.014e-23
Identity = 9/12 (75.00%), Postives = 9/12 (75.00%), Query Frame = 2
Query:  779 FAHNLERVEELQ 814
            F HNLE VE LQ
Sbjct:  183 FNHNLETVERLQ 194          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_FRAAA (Lipoyl synthase OS=Frankia alni (strain ACN14a) GN=lipA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.549e-23
Identity = 59/148 (39.86%), Postives = 79/148 (53.38%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREV 758
            W++  +  G +Y  +K  +R   LHTVCEEA CPN+ ECW   E     AT +I GD CTR C FC + + R            VAE++ + GL Y  +T V RDDL D GS  + +TVR++  L     +E L PDF G    + EV
Sbjct:   29 WIRTRMRTGPEYSDVKGLVRAAGLHTVCEEAGCPNIYECWEDRE-----ATFLIGGDVCTRRCDFCQIDSGRPTPLDRDEPR-RVAESVRTMGLRYATVTGVARDDLADGGSWLYGETVRQIHALSAGTGVEVLIPDFGGRADQLDEV 170          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA1_PROMP (Lipoyl synthase 1 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=lipA1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.549e-23
Identity = 54/148 (36.49%), Postives = 83/148 (56.08%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREV 758
            W++   P  ++       L +LKL+TVC+EA CPN+GEC++ G     TAT +I+G  CTR C +C++   R+           +AEA+    L +VVIT V+RDDL D G+  F + V ++++  P   IE L PD  GN   + ++
Sbjct:   14 WLRVKAPQVERIGNTANLLSDLKLNTVCQEASCPNIGECFASG-----TATFLIMGPGCTRACPYCDIDFDRSKRDLDPTEPDRLAEAVFRLKLKHVVITSVNRDDLDDGGASQFYKCVSEVRKKSPETTIELLIPDLCGNWSALEKI 156          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_LEPBP (Lipoyl synthase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=lipA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.860e-23
Identity = 56/142 (39.44%), Postives = 79/142 (55.63%), Query Frame = 3
Query:  315 WMKESIP---GGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFR 731
            WMK  +      D    ++ ++   +LHTVCE A CPNL  CW+       TAT M+ GD CTR C++C+V   +            VA ++ S GL +VV+T V+RDDL D G+ HFA+T+ K+K    +  IE L PDF+
Sbjct:   22 WMKVRVSFPTDSDALSVVRAEVESKELHTVCESASCPNLNHCWN-----RKTATYMLAGDICTRRCQYCDVAFGKPKPLDSLEPE-RVARSVQSLGLRHVVLTAVNRDDLKDGGASHFAETITKIKTYHKDCTIEVLIPDFK 157          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_LEPBA (Lipoyl synthase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=lipA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.860e-23
Identity = 56/142 (39.44%), Postives = 79/142 (55.63%), Query Frame = 3
Query:  315 WMKESIP---GGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFR 731
            WMK  +      D    ++ ++   +LHTVCE A CPNL  CW+       TAT M+ GD CTR C++C+V   +            VA ++ S GL +VV+T V+RDDL D G+ HFA+T+ K+K    +  IE L PDF+
Sbjct:   22 WMKVRVSFPTDSDALSVVRAEVESKELHTVCESASCPNLNHCWN-----RKTATYMLAGDICTRRCQYCDVAFGKPKPLDSLEPE-RVARSVQSLGLRHVVLTAVNRDDLKDGGASHFAETITKIKTYHKDCTIEVLIPDFK 157          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_LEIXX (Lipoyl synthase OS=Leifsonia xyli subsp. xyli GN=lipA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.288e-22
Identity = 57/148 (38.51%), Postives = 80/148 (54.05%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREV 758
            W+K     G +Y Q+   ++   LHTVC+EA CPN+ ECW   E     AT +I G  CTR C FC + T +            VAE++A  GL Y  +T V RDDL D+G+  +A+T+R++    P   +E L PDF G+   + EV
Sbjct:   28 WIKTRATMGPEYRQLHSLVKSEGLHTVCQEAGCPNIYECWEDRE-----ATFLIGGSQCTRRCDFCQIDTGKPAEFDRDEPR-RVAESVARMGLRYSTVTGVARDDLEDEGAWLYAETIREIHRQSPGTGVEILVPDFSGDPELLGEV 169          
The following BLAST results are available for this feature:
BLAST of EY732176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_BUCAT5.780e-2344.68Lipoyl synthase OS=Buchnera aphidicola subsp. Acyr... [more]
LIPA_BUCAI5.780e-2344.68Lipoyl synthase OS=Buchnera aphidicola subsp. Acyr... [more]
LIPA_BUCA55.780e-2344.68Lipoyl synthase OS=Buchnera aphidicola subsp. Acyr... [more]
LIPA2_SYNPX5.780e-2337.50Lipoyl synthase 2 OS=Synechococcus sp. (strain WH8... [more]
LIPA2_PROMM6.014e-2337.86Lipoyl synthase 2 OS=Prochlorococcus marinus (stra... [more]
LIPA_FRAAA7.549e-2339.86Lipoyl synthase OS=Frankia alni (strain ACN14a) GN... [more]
LIPA1_PROMP7.549e-2336.49Lipoyl synthase 1 OS=Prochlorococcus marinus subsp... [more]
LIPA_LEPBP9.860e-2339.44Lipoyl synthase OS=Leptospira biflexa serovar Pato... [more]
LIPA_LEPBA9.860e-2339.44Lipoyl synthase OS=Leptospira biflexa serovar Pato... [more]
LIPA_LEIXX1.288e-2238.51Lipoyl synthase OS=Leifsonia xyli subsp. xyli GN=l... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-056-G07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY732176 ID=EY732176; Name=EY732176; organism=Citrus sinensis; type=EST; length=834bp
CCACGCGTCCGCACAATCTCTAATTTTCTCTCTCTAAAGCTTCCCAGCCA
CCAGAGAGAGAAAAAAAATCGGCCATGCGATCGCGGTTCACATTAGCCCT
AGCTCGCACTTTAACAAGCAGAACGAGACCGTTTTCATCGTCAGCACAAA
CCCCACCAACCGAACGGCCCACCAAATTCCCCCAAACTCTCGCGGGCCTC
CGTGCCCGCCTGGCCTCCGAGTCACCCGCCCTCTCCGATTTCATCGACCT
CCAAAGCAACAGTTCGTACTCCGTCGAAGTTGGAACCAAAAAGAAGCCCC
TTCCCAAGCCCAAATGGATGAAGGAATCGATCCCCGGCGGCGATAAATAC
GTTCAGATTAAGAAAAAATTGCGCGAGTTGAAGCTTCACACTGTTTGTGA
AGAGGCCAAGTGCCCAAATTTGGGGGAGTGTTGGTCTGGCGGCGAGACGG
GCACTGCAACGGCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGT
TGCAGGTTTTGCAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCC
AGACGAGCCTACTAATGTTGCTGAGGCAATTGCGTCCTGNGGTTTGGATT
ATGTGGTGATTACTANTGTTGATAGAGATGATTTANCTGATCAGGGAAGT
GGGCATTTTGCTCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATAT
GCTTATTGAAGCATTGGGTCCTGATTTTCGCGGGAACAACGGGTGTGTCC
GGGAAGTTGCCAGTCAAGGTTGAATGTCTTTGCTCATAATTTGGAAAGGG
TGGAAGAGCTTCAAGTGGGGTGAGGGGATACGTT
back to top