EY732176

Overview
NameEY732176
Unique NameEY732176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12112 contig Csv1_Contig12112:1..834. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_BACFR (Lipoyl synthase OS=Bacteroides fragilis GN=lipA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.381e-31
Identity = 66/148 (44.59%), Postives = 88/148 (59.46%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREV 758
            W+K SI   ++Y + K+ +    LHT+C   +CPN+GECW     G  TAT MI GD CTR C+FCN +T R           +VAE+IA   L + VIT VDRDDL D G+ H+AQT+R++K L P    E L PDF+G    + +V
Sbjct:   12 WLKISIGANERYTETKRIVESHCLHTICSSGRCPNMGECW-----GKGTATFMIAGDICTRSCKFCNTQTGRPLPLDPDEP-AHVAESIALMKLSHAVITSVDRDDLPDLGAAHWAQTIREIKRLNPETTTEVLIPDFQGRKELIDQV 153          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_NEIMB (Lipoyl synthase OS=Neisseria meningitidis serogroup B GN=lipA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.767e-31
Identity = 70/140 (50.00%), Postives = 89/140 (63.57%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRG 734
            W++  +P   K+ +IK  LRE K+HTVCEEA CPN+GEC+S G     TAT MI+GD CTR C FC+V   R           N+AE++ +  L YVVIT VDRDDL D G+ HFA  ++ ++E  PN  IE L PDFRG
Sbjct:   40 WIRAKLPSR-KFFEIKDILREQKMHTVCEEASCPNIGECFSKG-----TATFMIMGDICTRRCPFCDVGHGRPNMLDPDEPR-NLAESVKAMNLRYVVITSVDRDDLRDGGAQHFADCIKAIRETSPNTKIEILVPDFRG 172          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_NEIMA (Lipoyl synthase OS=Neisseria meningitidis serogroup A GN=lipA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.767e-31
Identity = 70/140 (50.00%), Postives = 89/140 (63.57%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRG 734
            W++  +P   K+ +IK  LRE K+HTVCEEA CPN+GEC+S G     TAT MI+GD CTR C FC+V   R           N+AE++ +  L YVVIT VDRDDL D G+ HFA  ++ ++E  PN  IE L PDFRG
Sbjct:   40 WIRAKLPSR-KFFEIKDILREQKMHTVCEEASCPNIGECFSKG-----TATFMIMGDICTRRCPFCDVGHGRPNMLDPDEPK-NLAESVKAMNLRYVVITSVDRDDLRDGGAQHFADCIKAIRETSPNTKIEILVPDFRG 172          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_NEIM0 (Lipoyl synthase OS=Neisseria meningitidis serogroup C (strain 053442) GN=lipA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.767e-31
Identity = 70/140 (50.00%), Postives = 89/140 (63.57%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRG 734
            W++  +P   K+ +IK  LRE K+HTVCEEA CPN+GEC+S G     TAT MI+GD CTR C FC+V   R           N+AE++ +  L YVVIT VDRDDL D G+ HFA  ++ ++E  PN  IE L PDFRG
Sbjct:   40 WIRAKLPSR-KFFEIKDILREQKMHTVCEEASCPNIGECFSKG-----TATFMIMGDICTRRCPFCDVGHGRPNMLDPDEPR-NLAESVKAMNLRYVVITSVDRDDLRDGGAQHFADCIKAIRETSPNTKIEILVPDFRG 172          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_NEIG2 (Lipoyl synthase OS=Neisseria gonorrhoeae (strain NCCP11945) GN=lipA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.767e-31
Identity = 70/140 (50.00%), Postives = 89/140 (63.57%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRG 734
            W++  +P   K+ +IK  LRE K+HTVCEEA CPN+GEC+S G     TAT MI+GD CTR C FC+V   R           N+AE++ +  L YVVIT VDRDDL D G+ HFA  ++ ++E  PN  IE L PDFRG
Sbjct:   40 WIRAKLPSR-KFFEIKDILREQKMHTVCEEASCPNIGECFSKG-----TATFMIMGDICTRRCPFCDVGHGRPNMLDPDEPK-NLAESVKAMNLRYVVITSVDRDDLRDGGAQHFADCIKAIRETSPNTKIEILVPDFRG 172          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_NEIG1 (Lipoyl synthase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=lipA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.767e-31
Identity = 70/140 (50.00%), Postives = 89/140 (63.57%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRG 734
            W++  +P   K+ +IK  LRE K+HTVCEEA CPN+GEC+S G     TAT MI+GD CTR C FC+V   R           N+AE++ +  L YVVIT VDRDDL D G+ HFA  ++ ++E  PN  IE L PDFRG
Sbjct:   40 WIRAKLPSR-KFFEIKDILREQKMHTVCEEASCPNIGECFSKG-----TATFMIMGDICTRRCPFCDVGHGRPNMLDPDEPK-NLAESVKAMNLRYVVITSVDRDDLRDGGAQHFADCIKAIRETSPNTKIEILVPDFRG 172          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_DIAST (Lipoyl synthase OS=Diaphorobacter sp. (strain TPSY) GN=lipA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.767e-31
Identity = 70/138 (50.72%), Postives = 88/138 (63.77%), Query Frame = 3
Query:  345 KYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREV 758
            ++ +IK  LRE KLHTVCEEA CPN+GEC+     G  TAT MI+GD CTR C FC+V   R           N+A+ IA+  L YVVIT VDRDDL D GSGHF + +++ +EL P+  IE L PDFRG +    E+
Sbjct:   57 RFYEIKNILREHKLHTVCEEASCPNIGECF-----GRGTATFMIMGDKCTRRCPFCDVGHGRPDPLDKDEPL-NLAKTIAALRLKYVVITSVDRDDLRDGGSGHFVECIQRTRELSPSTQIEILTPDFRGRDDRALEI 188          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_ACISJ (Lipoyl synthase OS=Acidovorax sp. (strain JS42) GN=lipA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.767e-31
Identity = 70/138 (50.72%), Postives = 88/138 (63.77%), Query Frame = 3
Query:  345 KYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREV 758
            ++ +IK  LRE KLHTVCEEA CPN+GEC+     G  TAT MI+GD CTR C FC+V   R           N+A+ IA+  L YVVIT VDRDDL D GSGHF + +++ +EL P+  IE L PDFRG +    E+
Sbjct:   57 RFYEIKNILREHKLHTVCEEASCPNIGECF-----GRGTATFMIMGDKCTRRCPFCDVGHGRPDPLDKDEPL-NLAKTIAALRLKYVVITSVDRDDLRDGGSGHFVECIQRTRELSPSTQIEILTPDFRGRDDRALEI 188          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA1_BRAJA (Lipoyl synthase 1 OS=Bradyrhizobium japonicum GN=lipA1 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.767e-31
Identity = 71/150 (47.33%), Postives = 86/150 (57.33%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVAS 764
            W++   P    Y   +  +R   LHTVCEEA CPN+GECW         AT MI+GDTCTR C FCNVKT             NVAEA+A  GL +VVIT VDRDDL D G+ HFAQT+R ++   P+  IE L PDF    G +  V +
Sbjct:   33 WIRVRAPNTRGYADTRNIVRANGLHTVCEEAGCPNIGECWDKKH-----ATFMIMGDTCTRACAFCNVKTG-LPNALDADEPQNVAEAVAKLGLAHVVITSVDRDDLADGGAEHFAQTIRAIRAACPSTTIEILTPDFLRKEGALEVVVA 176          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA2_BRAJA (Lipoyl synthase 2 OS=Bradyrhizobium japonicum GN=lipA2 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.532e-31
Identity = 66/150 (44.00%), Postives = 91/150 (60.67%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVAS 764
            W++   PG  ++ + ++ +RE KL TVCEEA CPN+GECW+        AT MI+GDTCTR C FCNV+T              VA+A+A  GL++VV+T VDRDDL D G+ HFA T+  ++ + P   IE L PDF   +G +  V +
Sbjct:   40 WIRVKAPGSAQWTETQRIVRENKLVTVCEEASCPNIGECWAKKH-----ATFMIMGDTCTRACAFCNVRTGLPGPLDADEPG-KVADAVAKLGLEHVVVTSVDRDDLADGGAAHFAATIAAIRAMSPATSIEILTPDFLRKHGALETVVA 183          
The following BLAST results are available for this feature:
BLAST of EY732176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_BACFR3.381e-3144.59Lipoyl synthase OS=Bacteroides fragilis GN=lipA PE... [more]
LIPA_NEIMB5.767e-3150.00Lipoyl synthase OS=Neisseria meningitidis serogrou... [more]
LIPA_NEIMA5.767e-3150.00Lipoyl synthase OS=Neisseria meningitidis serogrou... [more]
LIPA_NEIM05.767e-3150.00Lipoyl synthase OS=Neisseria meningitidis serogrou... [more]
LIPA_NEIG25.767e-3150.00Lipoyl synthase OS=Neisseria gonorrhoeae (strain N... [more]
LIPA_NEIG15.767e-3150.00Lipoyl synthase OS=Neisseria gonorrhoeae (strain A... [more]
LIPA_DIAST5.767e-3150.72Lipoyl synthase OS=Diaphorobacter sp. (strain TPSY... [more]
LIPA_ACISJ5.767e-3150.72Lipoyl synthase OS=Acidovorax sp. (strain JS42) GN... [more]
LIPA1_BRAJA5.767e-3147.33Lipoyl synthase 1 OS=Bradyrhizobium japonicum GN=l... [more]
LIPA2_BRAJA7.532e-3144.00Lipoyl synthase 2 OS=Bradyrhizobium japonicum GN=l... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-056-G07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY732176 ID=EY732176; Name=EY732176; organism=Citrus sinensis; type=EST; length=834bp
CCACGCGTCCGCACAATCTCTAATTTTCTCTCTCTAAAGCTTCCCAGCCA
CCAGAGAGAGAAAAAAAATCGGCCATGCGATCGCGGTTCACATTAGCCCT
AGCTCGCACTTTAACAAGCAGAACGAGACCGTTTTCATCGTCAGCACAAA
CCCCACCAACCGAACGGCCCACCAAATTCCCCCAAACTCTCGCGGGCCTC
CGTGCCCGCCTGGCCTCCGAGTCACCCGCCCTCTCCGATTTCATCGACCT
CCAAAGCAACAGTTCGTACTCCGTCGAAGTTGGAACCAAAAAGAAGCCCC
TTCCCAAGCCCAAATGGATGAAGGAATCGATCCCCGGCGGCGATAAATAC
GTTCAGATTAAGAAAAAATTGCGCGAGTTGAAGCTTCACACTGTTTGTGA
AGAGGCCAAGTGCCCAAATTTGGGGGAGTGTTGGTCTGGCGGCGAGACGG
GCACTGCAACGGCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGT
TGCAGGTTTTGCAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCC
AGACGAGCCTACTAATGTTGCTGAGGCAATTGCGTCCTGNGGTTTGGATT
ATGTGGTGATTACTANTGTTGATAGAGATGATTTANCTGATCAGGGAAGT
GGGCATTTTGCTCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATAT
GCTTATTGAAGCATTGGGTCCTGATTTTCGCGGGAACAACGGGTGTGTCC
GGGAAGTTGCCAGTCAAGGTTGAATGTCTTTGCTCATAATTTGGAAAGGG
TGGAAGAGCTTCAAGTGGGGTGAGGGGATACGTT
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